7VH6

Cryo-EM structure of the hexameric plasma membrane H+-ATPase in the active state (pH 6.0, BeF3-, conformation 1, C1 symmetry)

7VH6 の概要

• エントリーDOI: 10.2210/pdb7vh6/pdb
• EMDBエントリー: 31988
• 分子名称: Plasma membrane ATPase 1, BERYLLIUM TRIFLUORIDE ION, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (3 entities in total)
• 機能のキーワード: p type atpase, plasma membrane h+-atpase, hexamer, translocase
• 由来する生物種: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
• タンパク質・核酸の鎖数: 6
• 化学式量合計: 642004.51

構造登録者

Zhao, P.,Zhao, C.,Chen, D.,Yun, C.,Li, H.,Bai, L. (登録日: 2021-09-21, 公開日: 2021-11-24, 最終更新日: 2025-07-02)

主引用文献

Zhao, P.,Zhao, C.,Chen, D.,Yun, C.,Li, H.,Bai, L.
Structure and activation mechanism of the hexameric plasma membrane H + -ATPase.
Nat Commun, 12:6439-6439, 2021

PubMed Abstract: The S. cerevisiae plasma membrane H-ATPase, Pma1, is a P3A-type ATPase and the primary protein component of the membrane compartment of Pma1 (MCP). Like other plasma membrane H-ATPases, Pma1 assembles and functions as a hexamer, a property unique to this subfamily among the larger family of P-type ATPases. It has been unclear how Pma1 organizes the yeast membrane into MCP microdomains, or why it is that Pma1 needs to assemble into a hexamer to establish the membrane electrochemical proton gradient. Here we report a high-resolution cryo-EM study of native Pma1 hexamers embedded in endogenous lipids. Remarkably, we found that the Pma1 hexamer encircles a liquid-crystalline membrane domain composed of 57 ordered lipid molecules. The Pma1-encircled lipid patch structure likely serves as the building block of the MCP. At pH 7.4, the carboxyl-terminal regulatory α-helix binds to the phosphorylation domains of two neighboring Pma1 subunits, locking the hexamer in the autoinhibited state. The regulatory helix becomes disordered at lower pH, leading to activation of the Pma1 hexamer. The activation process is accompanied by a 6.7 Å downward shift and a 40° rotation of transmembrane helices 1 and 2 that line the proton translocation path. The conformational changes have enabled us to propose a detailed mechanism for ATP-hydrolysis-driven proton pumping across the plasma membrane. Our structures will facilitate the development of antifungal drugs that target this essential protein.

PubMed: 34750373
DOI: 10.1038/s41467-021-26782-y

実験手法

ELECTRON MICROSCOPY (3.8 Å)