7TUX

Crystal Structure of Plasmodium falciparum Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase in complex with [(3S)-4-Hydroxy-3-[({2-amino-4-hydroxy-5H-pyrrolo[3,2-d]pyrimidin-7-yl}methyl)amino]butyl]phosphonic acid

7TUX の概要

• エントリーDOI: 10.2210/pdb7tux/pdb
• 分子名称: Hypoxanthine-guanine-xanthine phosphoribosyltransferase, [(3S)-3-{[(2-amino-4-hydroxy-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}-4-hydroxybutyl]phosphonic acid, PYROPHOSPHATE 2-, ... (7 entities in total)
• 機能のキーワード: inhibitors, drug design, transferase-inhibitor complex, malaria, transition state analogs, transferase, plasmodium falciparum, transferase-transferase inhibitor complex, transferase/transferase inhibitor
• 由来する生物種: Plasmodium falciparum (malaria parasite P. falciparum)
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 118363.66

構造登録者

Harijan, R.K.,Minnow, Y.V.T.,Bonanno, J.B.,Almo, S.C.,Schramm, V.L. (登録日: 2022-02-03, 公開日: 2022-12-07, 最終更新日: 2023-10-25)

主引用文献

V T Minnow, Y.,Suthagar, K.,Clinch, K.,Ducati, R.G.,Ghosh, A.,Buckler, J.N.,Harijan, R.K.,Cahill, S.M.,Tyler, P.C.,Schramm, V.L.
Inhibition and Mechanism of Plasmodium falciparum Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase.
Acs Chem.Biol., 17:3407-3419, 2022

PubMed Abstract: hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRT) is essential for purine salvage of hypoxanthine into parasite purine nucleotides. Transition state analogue inhibitors of HGXPRT are characterized by kinetic analysis, thermodynamic parameters, and X-ray crystal structures. Compound , 9-deazaguanine linked to an acyclic ribocation phosphonate mimic, shows a kinetic of 0.5 nM. Isothermal titration calorimetry (ITC) experiments of binding to HGXPRT reveal enthalpically driven binding with negative cooperativity for the binding of two inhibitor molecules in the tetrameric enzyme. Crystal structures of bound to HGXPRT define the hydrogen bond and ionic contacts to complement binding thermodynamics. Dynamics of ribosyl transfer from 5-phospho-α-d-ribosyl 1-pyrophosphate (PRPP) to hypoxanthine were examined by O isotope exchange at the bridging phosphoryl oxygen of PRPP pyrophosphate. Rotational constraints or short transition state lifetimes prevent torsional rotation and positional isotope exchange of bridging to nonbridging oxygen in the α-pyrophosphoryl group. Thermodynamic analysis of the transition state analogue and magnesium pyrophosphate binding reveal random and cooperative binding to HGXPRT, unlike the obligatory ordered reaction kinetics reported earlier for substrate kinetics.

PubMed: 36413975
DOI: 10.1021/acschembio.2c00546

実験手法

X-RAY DIFFRACTION (1.62 Å)