7M5V

human ATP13A2 in the AMPPNP-bound occluded state

7M5V の概要

• エントリーDOI: 10.2210/pdb7m5v/pdb
• EMDBエントリー: 23683
• 分子名称: Polyamine-transporting ATPase 13A2, (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, MAGNESIUM ION, ... (11 entities in total)
• 機能のキーワード: ion transport occluded state, membrane protein, transport protein
• 由来する生物種: Homo sapiens (human)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 136142.28

構造登録者

Lee, K.P.K. (登録日: 2021-03-24, 公開日: 2022-03-30, 最終更新日: 2024-11-20)

主引用文献

Tillinghast, J.,Drury, S.,Bowser, D.,Benn, A.,Lee, K.P.K.
Structural mechanisms for gating and ion selectivity of the human polyamine transporter ATP13A2.
Mol.Cell, 81:4650-4662.e4, 2021

PubMed Abstract: Mutations in ATP13A2, also known as PARK9, cause a rare monogenic form of juvenile-onset Parkinson's disease named Kufor-Rakeb syndrome and other neurodegenerative diseases. ATP13A2 encodes a neuroprotective P5B P-type ATPase highly enriched in the brain that mediates selective import of spermine ions from lysosomes into the cytosol via an unknown mechanism. Here we present three structures of human ATP13A2 bound to an ATP analog or to spermine in the presence of phosphomimetics determined by cryoelectron microscopy. ATP13A2 autophosphorylation opens a lysosome luminal gate to reveal a narrow lumen access channel that holds a spermine ion in its entrance. ATP13A2's architecture suggests physical principles underlying selective polyamine transport and anticipates a "pump-channel" intermediate that could function as a counter-cation conduit to facilitate lysosome acidification. Our findings establish a firm foundation to understand ATP13A2 mutations associated with disease and bring us closer to realizing ATP13A2's potential in neuroprotective therapy.

PubMed: 34715014
DOI: 10.1016/j.molcel.2021.10.002

実験手法

ELECTRON MICROSCOPY (2.9 Å)