7E0C
Structure of L-glutamate oxidase R305E mutant
Summary for 7E0C
| Entry DOI | 10.2210/pdb7e0c/pdb |
| Related | 2e1m |
| Descriptor | L-glutamate oxidase, FLAVIN-ADENINE DINUCLEOTIDE (3 entities in total) |
| Functional Keywords | l-glutamic acid oxidase, l-amino acid oxidase, oxidoreductase |
| Biological source | Streptomyces sp. X-119-6 |
| Total number of polymer chains | 1 |
| Total formula weight | 77212.80 |
| Authors | Ito, N.,Matsuo, S.,Inagaki, K.,Imada, K. (deposition date: 2021-01-27, release date: 2021-04-07, Last modification date: 2023-11-29) |
| Primary citation | Yano, Y.,Matsuo, S.,Ito, N.,Tamura, T.,Kusakabe, H.,Inagaki, K.,Imada, K. A new l-arginine oxidase engineered from l-glutamate oxidase. Protein Sci., 30:1044-1055, 2021 Cited by PubMed Abstract: The alternation of substrate specificity expands the application range of enzymes in industrial, medical, and pharmaceutical fields. l-Glutamate oxidase (LGOX) from Streptomyces sp. X-119-6 catalyzes the oxidative deamination of l-glutamate to produce 2-ketoglutarate with ammonia and hydrogen peroxide. LGOX shows strict substrate specificity for l-glutamate. Previous studies on LGOX revealed that Arg305 in its active site recognizes the side chain of l-glutamate, and replacement of Arg305 by other amino acids drastically changes the substrate specificity of LGOX. Here we demonstrate that the R305E mutant variant of LGOX exhibits strict specificity for l-arginine. The oxidative deamination activity of LGOX to l-arginine is higher than that of l-arginine oxidase form from Pseudomonas sp. TPU 7192. X-ray crystal structure analysis revealed that the guanidino group of l-arginine is recognized not only by Glu305 but also Asp433, Trp564, and Glu617, which interact with Arg305 in wild-type LGOX. Multiple interactions by these residues provide strict specificity and high activity of LGOX R305E toward l-arginine. LGOX R305E is a thermostable and pH stable enzyme. The amount of hydrogen peroxide, which is a byproduct of oxidative deamination of l-arginine by LGOX R305E, is proportional to the concentration of l-arginine in a range from 0 to 100 μM. The linear relationship is maintained around 1 μM of l-arginine. Thus, LGOX R305E is suitable for the determination of l-arginine. PubMed: 33764624DOI: 10.1002/pro.4070 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.65 Å) |
Structure validation
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