7AHK

Crystal structure of the outward-facing state of the substrate-free Na+-only bound glutamate transporter homolog GltPh

Summary for 7AHK

• Entry DOI: 10.2210/pdb7ahk/pdb
• Descriptor: Glutamate transporter homolog, SODIUM ION, octyl beta-D-glucopyranoside, ... (8 entities in total)
• Functional Keywords: glutamate transporter, aminoacid transport, homologue, membrane protein
• Biological source: Pyrococcus horikoshii
• Total number of polymer chains: 1
• Total formula weight: 49564.28

Authors

Kovalev, K.,Alleva, C.,Astashkin, A.,Machtens, J.-P.,Fahlke, C.,Gordeliy, V. (deposition date: 2020-09-24, release date: 2020-11-18, Last modification date: 2024-01-31)

Primary citation

Alleva, C.,Kovalev, K.,Astashkin, R.,Berndt, M.I.,Baeken, C.,Balandin, T.,Gordeliy, V.,Fahlke, C.,Machtens, J.P.
Na + -dependent gate dynamics and electrostatic attraction ensure substrate coupling in glutamate transporters.
Sci Adv, 6:-, 2020

PubMed Abstract: Excitatory amino acid transporters (EAATs) harness [Na], [K], and [H] gradients for fast and efficient glutamate removal from the synaptic cleft. Since each glutamate is cotransported with three Na ions, [Na] gradients are the predominant driving force for glutamate uptake. We combined all-atom molecular dynamics simulations, fluorescence spectroscopy, and x-ray crystallography to study Na:substrate coupling in the EAAT homolog Glt A lipidic cubic phase x-ray crystal structure of wild-type, Na-only bound Glt at 2.5-Å resolution revealed the fully open, outward-facing state primed for subsequent substrate binding. Simulations and kinetic experiments established that only the binding of two Na ions to the Na1 and Na3 sites ensures complete HP2 gate opening via a conformational selection-like mechanism and enables high-affinity substrate binding via electrostatic attraction. The combination of Na-stabilized gate opening and electrostatic coupling of aspartate to Na binding provides a constant Na:substrate transport stoichiometry over a broad range of neurotransmitter concentrations.

PubMed: 33208356
DOI: 10.1126/sciadv.aba9854

Experimental method

X-RAY DIFFRACTION (2.5 Å)