6VQN

Co-crystal structure of human PD-L1 complexed with Compound A

Summary for 6VQN

• Entry DOI: 10.2210/pdb6vqn/pdb
• Descriptor: Programmed cell death 1 ligand 1, N,N'-(2,2'-dimethyl[1,1'-biphenyl]-3,3'-diyl)bis(5-{[(2-hydroxyethyl)amino]methyl}pyridine-2-carboxamide) (3 entities in total)
• Functional Keywords: complex, cell cycle
• Biological source: Homo sapiens (Human)
• Total number of polymer chains: 3
• Total formula weight: 45567.20

Authors

White, A.,Lakshminarasimhan, D.,Leo, C.,Suto, R.K. (deposition date: 2020-02-05, release date: 2021-01-20, Last modification date: 2024-10-16)

Primary citation

Park, J.J.,Thi, E.P.,Carpio, V.H.,Bi, Y.,Cole, A.G.,Dorsey, B.D.,Fan, K.,Harasym, T.,Iott, C.L.,Kadhim, S.,Kim, J.H.,Lee, A.C.H.,Nguyen, D.,Paratala, B.S.,Qiu, R.,White, A.,Lakshminarasimhan, D.,Leo, C.,Suto, R.K.,Rijnbrand, R.,Tang, S.,Sofia, M.J.,Moore, C.B.
Checkpoint inhibition through small molecule-induced internalization of programmed death-ligand 1.
Nat Commun, 12:1222-1222, 2021

PubMed Abstract: Programmed death-ligand 1 is a glycoprotein expressed on antigen presenting cells, hepatocytes, and tumors which upon interaction with programmed death-1, results in inhibition of antigen-specific T cell responses. Here, we report a mechanism of inhibiting programmed death-ligand 1 through small molecule-induced dimerization and internalization. This represents a mechanism of checkpoint inhibition, which differentiates from anti-programmed death-ligand 1 antibodies which function through molecular disruption of the programmed death 1 interaction. Testing of programmed death ligand 1 small molecule inhibition in a humanized mouse model of colorectal cancer results in a significant reduction in tumor size and promotes T cell proliferation. In addition, antigen-specific T and B cell responses from patients with chronic hepatitis B infection are significantly elevated upon programmed death ligand 1 small molecule inhibitor treatment. Taken together, these data identify a mechanism of small molecule-induced programmed death ligand 1 internalization with potential therapeutic implications in oncology and chronic viral infections.

PubMed: 33619272
DOI: 10.1038/s41467-021-21410-1

Experimental method

X-RAY DIFFRACTION (2.49 Å)