6V7L

The structure of the P212121 crystal form of canavalin at 173 K

6V7L の概要

• エントリーDOI: 10.2210/pdb6v7l/pdb
• 分子名称: Canavalin, BENZOIC ACID (3 entities in total)
• 機能のキーワード: precanavalin, proteolytic cleavage, plant protein, vicillim, storage protein, benzoic acid
• 由来する生物種: Canavalia ensiformis (Jack bean)
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 151516.77

構造登録者

McPherson, A. (登録日: 2019-12-08, 公開日: 2020-02-19, 最終更新日: 2023-10-11)

主引用文献

McPherson, A.
Binding of benzoic acid and anions within the cupin domains of the vicilin protein canavalin from jack bean (Canavalia ensiformis): Crystal structures.
Biochem.Biophys.Res.Commun., 524:268-271, 2020

PubMed Abstract: X-ray intensities extending to 1.4 Å resolution were collected on the P6 hexagonal crystal form of canavalin, and extended to 1.9 Å for the orthorhombic C222 crystals. Structure determination of a new crystal form of canavalin having space group P222 is reported as well. Both the N and C terminal cupin domains contained identifiable ligands. For hexagonal crystals, in the cavity of the C terminal cupin, a molecule of benzoic acid was found, bound through carboxyl oxygens to Histidine 297, asparagine 284 and Arginine 376. The benzene ring was immersed in a cluster of at least 8 hydrophobic amino acid side chains. The N terminal cupin contained a molecule of citrate. Benzoic acid was also found to be present in the C terminal cupins of in the C222 and P222 crystal forms. In rhombohedral crystals, the C terminal cupin domain appeared to be occupied by a phosphate ion, but this was ambiguous. In cubic crystals, both domains were vacant. The N terminal cupin domains of canavalin in the P222 and rhombohedral crystals were also vacant, but the N terminal cupin domain of the C222 crystals contained a ligand whose identity is uncertain, but which has been modeled as HEPES buffer. A possible physiological role for the ligands and their complexes with canavalin is considered.

PubMed: 31983433
DOI: 10.1016/j.bbrc.2020.01.101

実験手法

X-RAY DIFFRACTION (2.8 Å)