6ULP

BRD3-BD2 in complex with the cyclic peptide 3.2_3

6ULP の概要

• エントリーDOI: 10.2210/pdb6ulp/pdb
• 分子名称: Bromodomain-containing protein 3, Cyclic peptide 3.2_3 (2 entities in total)
• 機能のキーワード: bet, bromodomain, macrocyclic peptide, brd3, inhibitor, rapid, transcription-inhibitor complex, transcription, transcription/inhibitor
• 由来する生物種: Homo sapiens (Human); 詳細
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 29517.02

構造登録者

Patel, K.,Walshe, J.L.,Walport, L.J.,Mackay, J.P. (登録日: 2019-10-08, 公開日: 2020-08-19, 最終更新日: 2023-11-15)

主引用文献

Patel, K.,Walport, L.J.,Walshe, J.L.,Solomon, P.D.,Low, J.K.K.,Tran, D.H.,Mouradian, K.S.,Silva, A.P.G.,Wilkinson-White, L.,Norman, A.,Franck, C.,Matthews, J.M.,Guss, J.M.,Payne, R.J.,Passioura, T.,Suga, H.,Mackay, J.P.
Cyclic peptides can engage a single binding pocket through highly divergent modes.
Proc.Natl.Acad.Sci.USA, 117:26728-26738, 2020

PubMed Abstract: Cyclic peptide library screening technologies show immense promise for identifying drug leads and chemical probes for challenging targets. However, the structural and functional diversity encoded within such libraries is largely undefined. We have systematically profiled the affinity, selectivity, and structural features of library-derived cyclic peptides selected to recognize three closely related targets: the acetyllysine-binding bromodomain proteins BRD2, -3, and -4. We report affinities as low as 100 pM and specificities of up to 10-fold. Crystal structures of 13 peptide-bromodomain complexes reveal remarkable diversity in both structure and binding mode, including both α-helical and β-sheet structures as well as bivalent binding modes. The peptides can also exhibit a high degree of structural preorganization. Our data demonstrate the enormous potential within these libraries to provide diverse binding modes against a single target, which underpins their capacity to yield highly potent and selective ligands.

PubMed: 33046654
DOI: 10.1073/pnas.2003086117

実験手法

X-RAY DIFFRACTION (2.8 Å)