6QOT

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 23 (3-Amino-5-(4-methoxyphenyl)pyrazole)

6QOT の概要

• エントリーDOI: 10.2210/pdb6qot/pdb
• 関連するPDBエントリー: 6NVR
• 分子名称: tRNA (guanine-N(1)-)-methyltransferase, 3-(4-methoxyphenyl)-1~{H}-pyrazol-5-amine, 1,2-ETHANEDIOL, ... (4 entities in total)
• 機能のキーワード: trmd, trna methyltransferase, spout methyltransferase, transferase
• 由来する生物種: Mycobacterium abscessus
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 53309.84

構造登録者

Thomas, S.E.,Whitehouse, A.J.,Coyne, A.G.,Abell, C.,Mendes, V.,Blundell, T.L. (登録日: 2019-02-12, 公開日: 2020-02-26, 最終更新日: 2024-05-15)

主引用文献

Thomas, S.E.,Whitehouse, A.J.,Brown, K.,Burbaud, S.,Belardinelli, J.M.,Sangen, J.,Lahiri, R.,Libardo, M.D.J.,Gupta, P.,Malhotra, S.,Boshoff, H.I.M.,Jackson, M.,Abell, C.,Coyne, A.G.,Blundell, T.L.,Floto, R.A.,Mendes, V.
Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification.
Nucleic Acids Res., 48:8099-8112, 2020

PubMed Abstract: Translational frameshift errors are often deleterious to the synthesis of functional proteins and could therefore be promoted therapeutically to kill bacteria. TrmD (tRNA-(N(1)G37) methyltransferase) is an essential tRNA modification enzyme in bacteria that prevents +1 errors in the reading frame during protein translation and represents an attractive potential target for the development of new antibiotics. Here, we describe the application of a structure-guided fragment-based drug discovery approach to the design of a new class of inhibitors against TrmD in Mycobacterium abscessus. Fragment library screening, followed by structure-guided chemical elaboration of hits, led to the rapid development of drug-like molecules with potent in vitro TrmD inhibitory activity. Several of these compounds exhibit activity against planktonic M. abscessus and M. tuberculosis as well as against intracellular M. abscessus and M. leprae, indicating their potential as the basis for a novel class of broad-spectrum mycobacterial drugs.

PubMed: 32602532
DOI: 10.1093/nar/gkaa539

実験手法

X-RAY DIFFRACTION (1.62 Å)