6PBE

ZINC17988990-bound TRPV5 in nanodiscs

Summary for 6PBE

• Entry DOI: 10.2210/pdb6pbe/pdb
• EMDB information: 20291 20292
• Descriptor: Transient receptor potential cation channel subfamily V member 5, (4-oxo-5-phenyl-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)methyl 3-(3-oxo-2,3-dihydro-4H-1,4-benzoxazin-4-yl)propanoate (2 entities in total)
• Functional Keywords: trpv5, trp channel, inhibitor, calcium channel, transport protein
• Biological source: Oryctolagus cuniculus (Rabbit)
• Total number of polymer chains: 4
• Total formula weight: 335290.54

Authors

Hughes, T.E.T.,Rosario, J.S.D.,Kapoor, A.,Yazici, A.T.,Fluck, E.C.,Filizola, M.,Rohacs, T.,Moiseenkova-Bell, V.Y. (deposition date: 2019-06-13, release date: 2019-11-06, Last modification date: 2024-03-20)

Primary citation

Hughes, T.E.,Del Rosario, J.S.,Kapoor, A.,Yazici, A.T.,Yudin, Y.,Fluck, E.C.,Filizola, M.,Rohacs, T.,Moiseenkova-Bell, V.Y.
Structure-based characterization of novel TRPV5 inhibitors.
Elife, 8:-, 2019

PubMed Abstract: Transient receptor potential vanilloid 5 (TRPV5) is a highly calcium selective ion channel that acts as the rate-limiting step of calcium reabsorption in the kidney. The lack of potent, specific modulators of TRPV5 has limited the ability to probe the contribution of TRPV5 in disease phenotypes such as hypercalcemia and nephrolithiasis. Here, we performed structure-based virtual screening (SBVS) at a previously identified TRPV5 inhibitor binding site coupled with electrophysiology screening and identified three novel inhibitors of TRPV5, one of which exhibits high affinity, and specificity for TRPV5 over other TRP channels, including its close homologue TRPV6. Cryo-electron microscopy of TRPV5 in the presence of the specific inhibitor and its parent compound revealed novel binding sites for this channel. Structural and functional analysis have allowed us to suggest a mechanism of action for the selective inhibition of TRPV5 and lay the groundwork for rational design of new classes of TRPV5 modulators.

PubMed: 31647410
DOI: 10.7554/eLife.49572

Experimental method

ELECTRON MICROSCOPY (3.78 Å)