6OFJ

Cryo-EM structure of the native rhodopsin dimer from rod photoreceptor cells

6OFJ の概要

• エントリーDOI: 10.2210/pdb6ofj/pdb
• EMDBエントリー: 20047
• 分子名称: Rhodopsin (1 entity in total)
• 機能のキーワード: g protein-coupled receptor, native dimer, rod outer segment, signaling protein
• 由来する生物種: Bos taurus (Bovine)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 78062.91

構造登録者

Zhao, D.Y.,Gulati, S.,Ernst, O.P.,Palczewski, K. (登録日: 2019-03-30, 公開日: 2019-08-21, 最終更新日: 2025-06-04)

主引用文献

Zhao, D.Y.,Poge, M.,Morizumi, T.,Gulati, S.,Van Eps, N.,Zhang, J.,Miszta, P.,Filipek, S.,Mahamid, J.,Plitzko, J.M.,Baumeister, W.,Ernst, O.P.,Palczewski, K.
Cryo-EM structure of the native rhodopsin dimer in nanodiscs.
J.Biol.Chem., 294:14215-14230, 2019

PubMed Abstract: Imaging of rod photoreceptor outer-segment disc membranes by atomic force microscopy and cryo-electron tomography has revealed that the visual pigment rhodopsin, a prototypical class A G protein-coupled receptor (GPCR), can organize as rows of dimers. GPCR dimerization and oligomerization offer possibilities for allosteric regulation of GPCR activity, but the detailed structures and mechanism remain elusive. In this investigation, we made use of the high rhodopsin density in the native disc membranes and of a bifunctional cross-linker that preserves the native rhodopsin arrangement by covalently tethering rhodopsins via Lys residue side chains. We purified cross-linked rhodopsin dimers and reconstituted them into nanodiscs for cryo-EM analysis. We present cryo-EM structures of the cross-linked rhodopsin dimer as well as a rhodopsin dimer reconstituted into nanodiscs from purified monomers. We demonstrate the presence of a preferential 2-fold symmetrical dimerization interface mediated by transmembrane helix 1 and the cytoplasmic helix 8 of rhodopsin. We confirmed this dimer interface by double electron-electron resonance measurements of spin-labeled rhodopsin. We propose that this interface and the arrangement of two protomers is a prerequisite for the formation of the observed rows of dimers. We anticipate that the approach outlined here could be extended to other GPCRs or membrane receptors to better understand specific receptor dimerization mechanisms.

PubMed: 31399513
DOI: 10.1074/jbc.RA119.010089

実験手法

ELECTRON MICROSCOPY (4.5 Å)