6MGJ

Crystal structure of the catalytic domain from GH74 enzyme PoGH74 from Paenibacillus odorifer, apoenzyme

6MGJ の概要

• エントリーDOI: 10.2210/pdb6mgj/pdb
• 関連するPDBエントリー: 6MGK 6MGL
• 分子名称: Xyloglucanase, MAGNESIUM ION, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ... (7 entities in total)
• 機能のキーワード: glycosylhydrolase, hydrolase, family gh74, xyloglucanase
• 由来する生物種: Paenibacillus odorifer
• タンパク質・核酸の鎖数: 8
• 化学式量合計: 659500.75

構造登録者

Stogios, P.J.,Skarina, T.,Nocek, B.,Arnal, G.,Brumer, H.,Savchenko, A. (登録日: 2018-09-14, 公開日: 2019-01-23, 最終更新日: 2024-11-20)

主引用文献

Arnal, G.,Stogios, P.J.,Asohan, J.,Skarina, T.,Savchenko, A.,Brumer, H.
Structural enzymology reveals the molecular basis of substrate regiospecificity and processivity of an exemplar bacterial glycoside hydrolase family 74endo-xyloglucanase.
Biochem. J., 475:3963-3978, 2018

PubMed Abstract: produces a single multimodular enzyme containing a glycoside hydrolase (GH) family 74 module (AIQ73809). Recombinant production and characterization of the GH74 module (GH74) revealed a highly specific, processive -xyloglucanase that can hydrolyze the polysaccharide backbone at both branched and unbranched positions. X-ray crystal structures obtained for the free enzyme and oligosaccharide complexes evidenced an extensive hydrophobic binding platform - the first in GH74 extending from subsites -4 to +6 - and unique mobile active-site loops. Site-directed mutagenesis revealed that glycine-476 was uniquely responsible for the promiscuous backbone-cleaving activity of GH74; replacement with tyrosine, which is conserved in many GH74 members, resulted in exclusive hydrolysis at unbranched glucose units. Likewise, systematic replacement of the hydrophobic platform residues constituting the positive subsites indicated their relative contributions to the processive mode of action. Specifically, W347 (+3 subsite) and W348 (+5 subsite) are essential for processivity, while W406 (+2 subsite) and Y372 (+6 subsite) are not strictly essential, but aid processivity.

PubMed: 30463871
DOI: 10.1042/BCJ20180763

実験手法

X-RAY DIFFRACTION (2 Å)