Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Summary for 6GZK

DescriptorTMR3 (48-MER), 5-carboxy methylrhodamine (2 entities in total)
Functional Keywordsrna aptamer, rna-ligand complex, three-way junction, rna
Biological sourcesynthetic construct
Total number of polymer chains1
Total molecular weight15925.69
Duchardt-Ferner, E.,Ohlenschlager, O.,Kreutz, C.R.,Wohnert, J. (deposition date: 2018-07-04, release date: 2019-07-17)
Primary citation
Duchardt-Ferner, E.,Kreutz, C.R.,Ohlenschlager, O.,Wohnert, J.
Structure of an RNA aptamer binding to the fluorophore tetramethylrhodamine
To Be Published,
Experimental method

Structure validation

ClashscoreRNA backbone0 0.25MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all NMR structures