Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B1)

Summary for 6ABF

EMDB information9581
DescriptorRNA (5'-R(P*CP*UP*CP*CP*UP*GP*CP*UP*UP*AP*UP*GP*CP*U)-3'), RNA (5'-R(P*AP*GP*CP*AP*GP*UP*AP*GP*CP*AP*AP*GP*GP*AP*G)-3'), Polymerase 3, ... (5 entities in total)
Functional Keywordsinfluenza d virus, polymerase, cryo-em, viral protein, viral protein-rna complex, viral protein/rna
Biological sourceInfluenza D virus (D/swine/Oklahoma/1334/2011)
Total number of polymer chains5
Total molecular weight207768.75
Peng, Q.,Peng, R.,Qi, J.,Gao, G.F.,Shi, Y. (deposition date: 2018-07-21, release date: 2019-06-12, Last modification date: 2019-07-10)
Primary citation
Peng, Q.,Liu, Y.,Peng, R.,Wang, M.,Yang, W.,Song, H.,Chen, Y.,Liu, S.,Han, M.,Zhang, X.,Wang, P.,Yan, J.,Zhang, B.,Qi, J.,Deng, T.,Gao, G.F.,Shi, Y.
Structural insight into RNA synthesis by influenza D polymerase.
Nat Microbiol, 2019
PubMed: 31209309 (PDB entries with the same primary citation)
DOI: 10.1038/s41564-019-0487-5
MImport into Mendeley
Experimental method

Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone4 0.2% 0.9% 0.44MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures