The crystal structure of Mandelate oxidase with benzoyl-formic acid

Summary for 6A08

Descriptor4-hydroxymandelate oxidase, MAGNESIUM ION, FLAVIN MONONUCLEOTIDE, ... (5 entities in total)
Functional Keywordsfmn-dependent oxidase, flavoprotein
Biological sourceAmycolatopsis orientalis (Nocardia orientalis)
Total number of polymer chains1
Total molecular weight40826.47
Li, T.L.,Lin, K.H. (deposition date: 2018-06-05, release date: 2019-06-19, Last modification date: 2019-10-16)
Primary citation
Lyu, S.Y.,Lin, K.H.,Yeh, H.W.,Li, Y.S.,Huang, C.M.,Wang, Y.L.,Shih, H.W.,Hsu, N.S.,Wu, C.J.,Li, T.L.
The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75:918-929, 2019
PubMed: 31588923 (PDB entries with the same primary citation)
DOI: 10.1107/S2059798319011938
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.1702 0.3% 0.8% 6.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-08-12