5ZO4

inactive state of the nuclease

5ZO4 の概要

• エントリーDOI: 10.2210/pdb5zo4/pdb
• 分子名称: Putative 3'-5' exonuclease family protein, SULFATE ION, MANGANESE (II) ION, ... (4 entities in total)
• 機能のキーワード: nuclease, hydrolase
• 由来する生物種: Agrobacterium fabrum str. J-07
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 47403.26

構造登録者

Yuan, Z.L.,Gu, L.C. (登録日: 2018-04-12, 公開日: 2019-04-10, 最終更新日: 2024-03-27)

主引用文献

Yuan, Z.,Gao, F.,Yin, K.,Gu, L.
NrnC, an RNase D-Like Protein FromAgrobacterium, Is a Novel Octameric Nuclease That Specifically Degrades dsDNA but Leaves dsRNA Intact.
Front Microbiol, 9:3230-3230, 2018

PubMed Abstract: NrnC from (At_NrnC, UniProt accession number A9CG28) is a nuclease containing a single DEDDy domain. Here, we determined the structures of both the apo and metal-ion-bound forms of At_NrnC. Although the overall structure of the At_NrnC protomer is similar to that of the RNase D exonuclease domain, nuclease assays unexpectedly revealed that At_NrnC possesses remarkably different substrate specificity. In contrast to RNase D, which degrades both single-stranded RNA (ssRNA) and double-stranded RNA (dsRNA), At_NrnC hydrolyses ssRNA, single-stranded DNA (ssDNA), and double-stranded DNA (dsDNA) with high efficiency but does not degrade dsRNA. Crystal packing analysis and biochemical data indicated that At_NrnC forms an octameric hollow cylindrical structure that allows ssRNA, ssDNA, and dsDNA, but not dsRNA, to enter the central tunnel where the multiple active sites perform hydrolysis. This novel structural feature confers a high processivity and is responsible for the preference of At_NrnC for longer dsDNA substrates.

PubMed: 30666241
DOI: 10.3389/fmicb.2018.03230

実験手法

X-RAY DIFFRACTION (2.5 Å)