5VJ7

Ferredoxin NADP Oxidoreductase (Xfn)

Summary for 5VJ7

• Entry DOI: 10.2210/pdb5vj7/pdb
• Descriptor: Oxidoreductase, Ferredoxin-NADP(+) reductase subunit alpha, IRON/SULFUR CLUSTER, ... (7 entities in total)
• Functional Keywords: archaea; hyperthermophile; electron bifurcation; nfnii; metabolism; sulfur, oxidoreductase
• Biological source: Pyrococcus furiosus COM1; More
• Total number of polymer chains: 2
• Total formula weight: 87824.60

Authors

Zadvornyy, O.A.,Nguyen, D.M.N.,Schut, G.J.,Lipscomb, G.L.,Tokmina-Lukaszewska, M.,Adams, M.W.W.,Peters, J.W. (deposition date: 2017-04-18, release date: 2017-07-19, Last modification date: 2023-10-04)

Primary citation

Nguyen, D.M.N.,Schut, G.J.,Zadvornyy, O.A.,Tokmina-Lukaszewska, M.,Poudel, S.,Lipscomb, G.L.,Adams, L.A.,Dinsmore, J.T.,Nixon, W.J.,Boyd, E.S.,Bothner, B.,Peters, J.W.,Adams, M.W.W.
Two functionally distinct NADP(+)-dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus.
J. Biol. Chem., 292:14603-14616, 2017

PubMed Abstract: Electron bifurcation has recently gained acceptance as the third mechanism of energy conservation in which energy is conserved through the coupling of exergonic and endergonic reactions. A structure-based mechanism of bifurcation has been elucidated recently for the flavin-based enzyme NADH-dependent ferredoxin NADP oxidoreductase I (NfnI) from the hyperthermophillic archaeon NfnI is thought to be involved in maintaining the cellular redox balance, producing NADPH for biosynthesis by recycling the two other primary redox carriers, NADH and ferredoxin. The genome encodes an NfnI paralog termed NfnII, and the two are differentially expressed, depending on the growth conditions. In this study, we show that deletion of the genes encoding either NfnI or NfnII affects the cellular concentrations of NAD(P)H and particularly NADPH. This results in a moderate to severe growth phenotype in deletion mutants, demonstrating a key role for each enzyme in maintaining redox homeostasis. Despite their similarity in primary sequence and cofactor content, crystallographic, kinetic, and mass spectrometry analyses reveal that there are fundamental structural differences between the two enzymes, and NfnII does not catalyze the NfnI bifurcating reaction. Instead, it exhibits non-bifurcating ferredoxin NADP oxidoreductase-type activity. NfnII is therefore proposed to be a bifunctional enzyme and also to catalyze a bifurcating reaction, although its third substrate, in addition to ferredoxin and NADP(H), is as yet unknown.

PubMed: 28705933
DOI: 10.1074/jbc.M117.794172

Experimental method

X-RAY DIFFRACTION (2.55 Å)