5UXT

Coiled-coil Trimer with Glu:Trp:Lys Triad

Summary for 5UXT

• Entry DOI: 10.2210/pdb5uxt/pdb
• Descriptor: coiled-coil trimer with Glu:Trp:Lys triad, GLYCEROL (3 entities in total)
• Functional Keywords: coiled coil, triad, de novo protein
• Biological source: synthetic construct
• Total number of polymer chains: 3
• Total formula weight: 11910.62

Authors

Smith, M.S.,Billings, W.M.,Whitby, F.G.,Miller, M.B.,Price, J.L. (deposition date: 2017-02-23, release date: 2017-08-09, Last modification date: 2024-10-23)

Primary citation

Smith, M.S.,Billings, W.M.,Whitby, F.G.,Miller, M.B.,Price, J.L.
Enhancing a long-range salt bridge with intermediate aromatic and nonpolar amino acids.
Org. Biomol. Chem., 15:5882-5886, 2017

PubMed Abstract: The interaction of a positively charged amino acid residue with a negatively charged residue (i.e. a salt bridge) can contribute substantially to protein conformational stability, especially when two ionic groups are in close proximity. At longer distances, this stabilizing effect tends to drop off precipitously. However, several lines of evidence suggest that salt-bridge interaction could persist at longer distances if an aromatic amino acid residue were positioned between the anion and cation. Here we explore this possibility in the context of a peptide in which a Lys residue occupies the i + 8 position relative to an i-position Glu on the solvent-exposed surface of a helix-bundle homotrimer. Variable temperature circular dichroism (CD) experiments indicate that an i + 4-position Trp enables a favorable long-range interaction between Glu and the i + 8 Lys. A substantial portion of this effect relies on the presence of a hydrogen-bond donor on the arene; however, non-polar arenes, a cyclic hydrocarbon, and an acyclic Leu side-chain can also enhance the long-range salt bridge, possibly by excluding water and ions from the space between Glu and Lys.

PubMed: 28678274
DOI: 10.1039/c7ob01198a

Experimental method

X-RAY DIFFRACTION (2.197 Å)