5SUP

Crystal structure of the Sub2-Yra1 complex in association with RNA

5SUP の概要

• エントリーDOI: 10.2210/pdb5sup/pdb
• 関連するPDBエントリー: 5SUQ
• 分子名称: ATP-dependent RNA helicase SUB2, RNA annealing protein YRA1, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), ... (7 entities in total)
• 機能のキーワード: mrna export, hydrolase-rna complex, hydrolase/rna
• 由来する生物種: Saccharomyces cerevisiae (Baker's yeast); 詳細
• 細胞内の位置: Nucleus : Q07478 Q12159
• タンパク質・核酸の鎖数: 9
• 化学式量合計: 159621.47

構造登録者

Ren, Y.,Schmiege, P.,Blobel, G. (登録日: 2016-08-03, 公開日: 2017-01-18, 最終更新日: 2024-10-23)

主引用文献

Ren, Y.,Schmiege, P.,Blobel, G.
Structural and biochemical analyses of the DEAD-box ATPase Sub2 in association with THO or Yra1.
Elife, 6:-, 2017

PubMed Abstract: mRNA is cotranscrptionally processed and packaged into messenger ribonucleoprotein particles (mRNPs) in the nucleus. Prior to export through the nuclear pore, mRNPs undergo several obligatory remodeling reactions. In yeast, one of these reactions involves loading of the mRNA-binding protein Yra1 by the DEAD-box ATPase Sub2 as assisted by the hetero-pentameric THO complex. To obtain molecular insights into reaction mechanisms, we determined crystal structures of two relevant complexes: a THO hetero-pentamer bound to Sub2 at 6.0 Å resolution; and Sub2 associated with an ATP analogue, RNA, and a C-terminal fragment of Yra1 (Yra1-C) at 2.6 Å resolution. We found that the 25 nm long THO clamps Sub2 in a half-open configuration; in contrast, when bound to the ATP analogue, RNA and Yra1-C, Sub2 assumes a closed conformation. Both THO and Yra1-C stimulated Sub2's intrinsic ATPase activity. We propose that THO surveys common landmarks in each nuclear mRNP to localize Sub2 for targeted loading of Yra1.

PubMed: 28059701
DOI: 10.7554/eLife.20070

実験手法

X-RAY DIFFRACTION (2.6 Å)