5O1Y

Structure of Nrd1 RNA binding domain in complex with RNA (GUAA)

5O1Y の概要

• エントリーDOI: 10.2210/pdb5o1y/pdb
• 分子名称: Protein NRD1, RNA (5'-R(*GP*UP*AP*A)-3'), 1,2-ETHANEDIOL, ... (5 entities in total)
• 機能のキーワード: nrd1, nrd1 complex, rrm, rna-binding, non-coding transcription, transcription
• 由来する生物種: Saccharomyces cerevisiae (Baker's yeast); 詳細
• 細胞内の位置: Nucleus : P53617
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 21619.69

構造登録者

Franco-Echevarria, E.,Perez-Canadillas, J.M.,Gonzalez, B. (登録日: 2017-05-19, 公開日: 2017-08-02, 最終更新日: 2024-01-17)

主引用文献

Franco-Echevarria, E.,Gonzalez-Polo, N.,Zorrilla, S.,Martinez-Lumbreras, S.,Santiveri, C.M.,Campos-Olivas, R.,Sanchez, M.,Calvo, O.,Gonzalez, B.,Perez-Canadillas, J.M.
The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition.
Nucleic Acids Res., 45:10293-10305, 2017

PubMed Abstract: Transcription termination of non-coding RNAs is regulated in yeast by a complex of three RNA binding proteins: Nrd1, Nab3 and Sen1. Nrd1 is central in this process by interacting with Rbp1 of RNA polymerase II, Trf4 of TRAMP and GUAA/G terminator sequences. We lack structural data for the last of these binding events. We determined the structures of Nrd1 RNA binding domain and its complexes with three GUAA-containing RNAs, characterized RNA binding energetics and tested rationally designed mutants in vivo. The Nrd1 structure shows an RRM domain fused with a second α/β domain that we name split domain (SD), because it is formed by two non-consecutive segments at each side of the RRM. The GUAA interacts with both domains and with a pocket of water molecules, trapped between the two stacking adenines and the SD. Comprehensive binding studies demonstrate for the first time that Nrd1 has a slight preference for GUAA over GUAG and genetic and functional studies suggest that Nrd1 RNA binding domain might play further roles in non-coding RNAs transcription termination.

PubMed: 28973465
DOI: 10.1093/nar/gkx685

実験手法

X-RAY DIFFRACTION (2.45 Å)