5M92

PCE reductive dehalogenase from S. multivorans in complex with 2,4-dibromophenol

Summary for 5M92

• Entry DOI: 10.2210/pdb5m92/pdb
• Related: 5M2G
• Descriptor: Tetrachloroethene reductive dehalogenase catalytic subunit PceA, IRON/SULFUR CLUSTER, NORPSEUDO-B12, ... (8 entities in total)
• Functional Keywords: organohalide respiration anaerobic crystallisation cobalamin, oxidoreductase
• Biological source: Sulfurospirillum multivorans DSM 12446
• Total number of polymer chains: 2
• Total formula weight: 110438.50

Authors

Kunze, C.,Bommer, M.,Hagen, W.R.,Uksa, M.,Dobbek, H.,Schubert, T.,Diekert, G. (deposition date: 2016-10-31, release date: 2017-07-12, Last modification date: 2024-01-17)

Primary citation

Kunze, C.,Bommer, M.,Hagen, W.R.,Uksa, M.,Dobbek, H.,Schubert, T.,Diekert, G.
Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer.
Nat Commun, 8:15858-15858, 2017

PubMed Abstract: The capacity of metal-containing porphyrinoids to mediate reductive dehalogenation is implemented in cobamide-containing reductive dehalogenases (RDases), which serve as terminal reductases in organohalide-respiring microbes. RDases allow for the exploitation of halogenated compounds as electron acceptors. Their reaction mechanism is under debate. Here we report on substrate-enzyme interactions in a tetrachloroethene RDase (PceA) that also converts aryl halides. The shape of PceA's highly apolar active site directs binding of bromophenols at some distance from the cobalt and with the hydroxyl substituent towards the metal. A close cobalt-substrate interaction is not observed by electron paramagnetic resonance spectroscopy. Nonetheless, a halogen substituent para to the hydroxyl group is reductively eliminated and the path of the leaving halide is traced in the structure. Based on these findings, an enzymatic mechanism relying on a long-range electron transfer is concluded, which is without parallel in vitamin B-dependent biochemistry and represents an effective mode of RDase catalysis.

PubMed: 28671181
DOI: 10.1038/ncomms15858

Experimental method

X-RAY DIFFRACTION (1.785 Å)