5DDZ

Crystal structure of the RTA-c10-P2 complex

5DDZ の概要

• エントリーDOI: 10.2210/pdb5ddz/pdb
• 分子名称: Ricin, 60S acidic ribosomal protein P2 (3 entities in total)
• 機能のキーワード: ricin, p2, complex, hydrolase-peptide complex, hydrolase/peptide
• 由来する生物種: Ricinus communis (Castor bean); 詳細
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 32085.04

構造登録者

Zhu, Y.,Fan, X.,Wang, C.,Niu, L.,Li, X.,Teng, M. (登録日: 2015-08-25, 公開日: 2016-09-07, 最終更新日: 2023-11-08)

主引用文献

Fan, X.,Zhu, Y.,Wang, C.,Niu, L.,Teng, M.,Li, X.
Structural insights into the interaction of the ribosomal P stalk protein P2 with a type II ribosome-inactivating protein ricin
Sci Rep, 6:37803-37803, 2016

PubMed Abstract: Ricin is a type II ribosome-inactivating protein (RIP) that depurinates A at the sarcin-ricin loop of 28 S ribosomal RNA (rRNA), thus inactivating the ribosome by preventing elongation factors from binding to the GTPase activation centre. Recent studies have disclosed that the conserved C-terminal domain (CTD) of eukaryotic ribosomal P stalk proteins is involved in the process that RIPs target ribosome. However, the details of the molecular interaction between ricin and P stalk proteins remain unknown. Here, we report the structure of ricin-A chain (RTA) in a complex with the CTD of the human ribosomal protein P2. The structure shows that the Phe, Leu and Phe residues of P2 insert into a hydrophobic pocket formed by the Tyr, Arg, Phe and Ile residues of RTA, while Asp of P2 forms hydrogen bonds with Arg of RTA. The key residues in RTA and P2 for complex formation were mutated, and their importance was determined by pull-down assays. The results from cell-free translation assays further confirmed that the interaction with P stalk proteins is essential for the inhibition of protein synthesis by RTA. Taken together, our results provide a structural basis that will improve our understanding of the process by which ricin targets the ribosome, which will benefit the development of effective small-molecule inhibitors for use as therapeutic agents.

PubMed: 27886256
DOI: 10.1038/srep37803

実験手法

X-RAY DIFFRACTION (1.5 Å)