5CD5

Crystal structure of an immature VRC01-class antibody DRVIA7 from a Chinese donor bound to clade A/E HIV-1 gp120 core

5CD5 の概要

• エントリーDOI: 10.2210/pdb5cd5/pdb
• 関連するPDBエントリー: 5CD3
• 分子名称: 93TH057 HIV-1 gp120 core, DRVIA7 Fab Heavy Chain, DRVIA7 Fab Light Chain, ... (7 entities in total)
• 機能のキーワード: vrc01, gp120, hiv-1, antibody, immune system
• 由来する生物種: Human immunodeficiency virus 1; 詳細
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 89978.61

構造登録者

Kong, L.,Wilson, I.A. (登録日: 2015-07-03, 公開日: 2016-04-06, 最終更新日: 2024-10-09)

主引用文献

Kong, L.,Ju, B.,Chen, Y.,He, L.,Ren, L.,Liu, J.,Hong, K.,Su, B.,Wang, Z.,Ozorowski, G.,Ji, X.,Hua, Y.,Chen, Y.,Deller, M.C.,Hao, Y.,Feng, Y.,Garces, F.,Wilson, R.,Dai, K.,O'Dell, S.,McKee, K.,Mascola, J.R.,Ward, A.B.,Wyatt, R.T.,Li, Y.,Wilson, I.A.,Zhu, J.,Shao, Y.
Key gp120 Glycans Pose Roadblocks to the Rapid Development of VRC01-Class Antibodies in an HIV-1-Infected Chinese Donor.
Immunity, 44:939-950, 2016

PubMed Abstract: VRC01-class antibodies neutralize diverse HIV-1 strains by targeting the conserved CD4-binding site. Despite extensive investigations, crucial events in the early stage of VRC01 development remain elusive. We demonstrated how VRC01-class antibodies emerged in a Chinese donor by antigen-specific single B cell sorting, structural and functional studies, and longitudinal antibody and virus repertoire analyses. A monoclonal antibody DRVIA7 with modest neutralizing breadth was isolated that displayed a subset of VRC01 signatures. X-ray and EM structures revealed a VRC01-like angle of approach, but less favorable interactions between the DRVIA7 light-chain CDR1 and the N terminus with N276 and V5 glycans of gp120. Although the DRVIA7 lineage was unable to acquire broad neutralization, longitudinal analysis revealed a repertoire-encoded VRC01 light-chain CDR3 signature and VRC01-like neutralizing heavy-chain precursors that rapidly matured within 2 years. Thus, light chain accommodation of the glycan shield should be taken into account in vaccine design targeting this conserved site of vulnerability.

PubMed: 27067056
DOI: 10.1016/j.immuni.2016.03.006

実験手法

X-RAY DIFFRACTION (3.396 Å)