Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5JIW

Crystal structure of Thermus aquaticus amylomaltase (GH77) in complex with a 34-meric cycloamylose

Summary for 5JIW
Entry DOI10.2210/pdb5jiw/pdb
Descriptor4-alpha-glucanotransferase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, 1,2-ETHANEDIOL, ... (5 entities in total)
Functional Keywordsglycoside hydrolase, tim barrel cycloamylose, hydrolase
Biological sourceThermus aquaticus
Total number of polymer chains1
Total formula weight60187.60
Authors
Roth, C.,Bexten, N.,Weizenmann, N.,Saenger, T.,Maier, T.,Zimmermann, W.,Straeter, N. (deposition date: 2016-04-22, release date: 2017-01-25, Last modification date: 2024-10-16)
Primary citationRoth, C.,Weizenmann, N.,Bexten, N.,Saenger, W.,Zimmermann, W.,Maier, T.,Strater, N.
Amylose recognition and ring-size determination of amylomaltase.
Sci Adv, 3:e1601386-e1601386, 2017
Cited by
PubMed Abstract: Starch is a major carbon and energy source throughout all kingdoms of life. It consists of two carbohydrate polymers, branched amylopectin and linear amylose, which are sparingly soluble in water. Hence, the enzymatic breakdown by glycoside hydrolases (GHs) is of great biological and societal importance. Amylomaltases (AMs) are GHs specialized in the hydrolysis of α-1,4-linked sugar chains such as amylose. They are able to catalyze an intramolecular transglycosylation of a bound sugar chain yielding polymeric sugar rings, the cycloamyloses (CAs), consisting of 20 to 100 glucose units. Despite a wealth of data on short oligosaccharide binding to GHs, no structural evidence is available for their interaction with polymeric substrates that better represent the natural polysaccharide. We have determined the crystal structure of AM in complex with a 34-meric CA-one of the largest carbohydrates resolved by x-ray crystallography and a mimic of the natural polymeric amylose substrate. In total, 15 glucose residues interact with the protein in an extended crevice with a length of more than 40 Å. A modified succinimide, derived from aspartate, mediates protein-sugar interactions, suggesting a biological role for this nonstandard amino acid. The structure, together with functional assays, provides unique insights into the interaction of GHs with their polymeric substrate and reveals a molecular ruler mechanism for minimal ring-size determination of CA products.
PubMed: 28097217
DOI: 10.1126/sciadv.1601386
PDB entries with the same primary citation
Experimental method
X-RAY DIFFRACTION (1.73 Å)
Structure validation

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon