4Z84

PKAB3 in complex with pyrrolidine inhibitor 34a

4Z84 の概要

• エントリーDOI: 10.2210/pdb4z84/pdb
• 関連するPDBエントリー: 1Q61 4Z83
• 分子名称: cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha, 7-[(3S,4R)-4-(3-chlorophenyl)carbonylpyrrolidin-3-yl]-3H-quinazolin-4-one, ... (5 entities in total)
• 機能のキーワード: inhibitor, protein kinase, structure-guided, transferase
• 由来する生物種: Bos taurus (Bovine); 詳細
• 細胞内の位置: Cytoplasm : P00517
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 43472.94

構造登録者

Lund, B.A.,Alam, K.A.,Engh, R.A. (登録日: 2015-04-08, 公開日: 2015-12-02, 最終更新日: 2024-10-23)

主引用文献

Lauber, B.S.,Hardegger, L.A.,Asraful, A.K.,Lund, B.A.,Dumele, O.,Harder, M.,Kuhn, B.,Engh, R.A.,Diederich, F.
Addressing the Glycine-Rich Loop of Protein Kinases by a Multi-Facetted Interaction Network: Inhibition of PKA and a PKB Mimic.
Chemistry, 22:211-221, 2016

PubMed Abstract: Protein kinases continue to be hot targets in drug discovery research, as they are involved in many essential cellular processes and their deregulation can lead to a variety of diseases. A series of 32 enantiomerically pure inhibitors was synthesized and tested towards protein kinase A (PKA) and protein kinase B mimic PKAB3 (PKA triple mutant). The ligands bind to the hinge region, ribose pocket, and glycine-rich loop at the ATP site. Biological assays showed high potency against PKA, with Ki values in the low nanomolar range. The investigation demonstrates the significance of targeting the often neglected glycine-rich loop for gaining high binding potency. X-ray co-crystal structures revealed a multi-facetted network of ligand-loop interactions for the tightest binders, involving orthogonal dipolar contacts, sulfur and other dispersive contacts, amide-π stacking, and H-bonding to organofluorine, besides efficient water replacement. The network was analyzed in a computational approach.

PubMed: 26578105
DOI: 10.1002/chem.201503552

実験手法

X-RAY DIFFRACTION (1.554 Å)