Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis (Space)

Summary for 4Y04

Related4XZY 4Y01 4Y02 4Y06
DescriptorPeptidase S46, POTASSIUM ION, GLYCEROL, ... (4 entities in total)
Functional Keywordsspace, wt, hydrolase
Biological sourcePorphyromonas gingivalis
Total number of polymer chains1
Total molecular weight82216.49
Primary citation
Sakamoto, Y.,Suzuki, Y.,Iizuka, I.,Tateoka, C.,Roppongi, S.,Fujimoto, M.,Inaka, K.,Tanaka, H.,Yamada, M.,Ohta, K.,Gouda, H.,Nonaka, T.,Ogasawara, W.,Tanaka, N.
Structural and mutational analyses of dipeptidyl peptidase 11 from Porphyromonas gingivalis reveal the molecular basis for strict substrate specificity.
Sci Rep, 5:11151-11151, 2015
PubMed: 26057589 (PDB entries with the same primary citation)
DOI: 10.1038/srep11151
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.22520.9%2.1%3.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution