4XQJ

Crystal structure of AgrA LytTR domain in complex with promoters

Summary for 4XQJ

• Entry DOI: 10.2210/pdb4xqj/pdb
• Related: 4XQN 4XQQ
• Descriptor: Accessory gene regulator A, DNA (5'-D(P*AP*CP*AP*GP*TP*TP*AP*AP*GP*AP*AP*T)-3'), DNA (5'-D(*AP*AP*TP*TP*CP*TP*TP*AP*AP*CP*TP*GP*T)-3'), ... (7 entities in total)
• Functional Keywords: protein-dna complex, dna binding protein-dna complex, dna binding protein/dna
• Biological source: Staphylococcus aureus (strain COL); More
• Total number of polymer chains: 6
• Total formula weight: 40374.73

Authors

Gopal, B.,Rajasree, K. (deposition date: 2015-01-19, release date: 2016-04-06, Last modification date: 2023-11-08)

Primary citation

Rajasree, K.,Fasim, A.,Gopal, B.
Conformational features of theStaphylococcus aureusAgrA-promoter interactions rationalize quorum-sensing triggered gene expression.
Biochem Biophys Rep, 6:124-134, 2016

PubMed Abstract: The intracellular trigger for the quorum sensing response mechanism in involves the phosphorylation of the response regulator AgrA by the membrane anchored histidine kinase AgrC. AgrA activates transcription from three promoter sequences (P1-P3). The promoter strength, conditional association of AgrA with these promoter elements and temporal delay in AgrA-mediated changes in gene expression contribute to the diversity of the quorum sensing response in different strains. AgrA promoters comprise of imperfect direct repeats of DNA with a consensus sequence- [TA][AC][CA]GTTN[AG][TG]. Here we describe crystal structures of the DNA-binding (LytTR) domain of AgrA with different cognate DNA sequences that reveal a hitherto unanticipated feature of AgrA-DNA interactions. AgrA promoter interactions are asymmetric with fewer interactions at the binding site proximal to the -35 promoter element. Biochemical assays to evaluate AgrA-promoter interactions suggests that phosphorylation induced dimerization of AgrA can compensate for the asymmetry in AgrA-DNA interactions. The structures also provide a basis to rationalize mutations that were noted to alter AgrA activity without affecting protein-DNA interactions. Put together, the structural data, gene expression and mutational analysis reveal that promoter strength and AgrA phosphorylation enable quorum-sensing triggered transcriptional changes leading to a transition from the persistent to virulent phenotype.

PubMed: 28955870
DOI: 10.1016/j.bbrep.2016.03.012

Experimental method

X-RAY DIFFRACTION (1.9 Å)