4N7F

Crystal structure of 3rd WW domain of human Nedd4-1

4N7F の概要

• エントリーDOI: 10.2210/pdb4n7f/pdb
• 関連するPDBエントリー: 4N7H
• 分子名称: E3 ubiquitin-protein ligase NEDD4 (2 entities in total)
• 機能のキーワード: beta sheet, ww domain, target binding, proline rich region, cytosolic, protein binding
• 由来する生物種: Homo sapiens (human)
• 細胞内の位置: Cytoplasm (By similarity): P46934
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 8894.08

構造登録者

Qi, S.,O'Hayre, M.,Gutkind, J.S.,Hurley, J. (登録日: 2013-10-15, 公開日: 2014-01-08, 最終更新日: 2024-02-28)

主引用文献

Qi, S.,O'Hayre, M.,Gutkind, J.S.,Hurley, J.H.
Structural and biochemical basis for ubiquitin ligase recruitment by arrestin-related domain-containing protein-3 (ARRDC3).
J.Biol.Chem., 289:4743-4752, 2014

PubMed Abstract: After protracted stimulation, the β2-adrenergic receptor and many other G-protein-coupled receptors are ubiquitinated and down-regulated. Arrestin-related domain-containing protein-3 (ARRDC3) has been proposed to recruit the ubiquitin ligase Nedd4 to the β2-adrenergic receptor. ARRDC3 contains two PPXY motifs that could potentially interact with any of the four WW domains of Nedd4. Here we dissect the interaction determinants. ARRDC3 PPXY-Nedd4 WW dissociation constants vary from unmeasurable to Kd = 3 μM for the third WW domain of Nedd4 binding to the first PPXY motif of ARRDC3. Structures of the uncomplexed and PPXY1-bound WW3 domain were determined at 1.1 and 1.7 Å resolution. The structures revealed conformational changes upon binding and the hydrogen bonding network in exquisite detail. Tight packing of ARRDC3 Val-352', part of a 310 helix at the C terminus of PPXY1, is important for high affinity binding to WW3. Although no single WW domain is strictly essential for the binding of Nedd4 and ARRDC3 expressed in HEK293 cells, high affinity binding of full-length ARRDC3 and Nedd4 is driven by the avid interaction of both PPXY motifs with either the WW2-WW3 or WW3-WW4 combinations, with Kd values as low as 300 nM.

PubMed: 24379409
DOI: 10.1074/jbc.M113.527473

実験手法

X-RAY DIFFRACTION (1.102 Å)