4LK8

Crystal structure of CyaY protein from Psychromonas ingrahamii in complex with Co(II)

Summary for 4LK8

• Entry DOI: 10.2210/pdb4lk8/pdb
• Related: 4hs5
• Descriptor: Protein CyaY, COBALT (II) ION (3 entities in total)
• Functional Keywords: metal binding protein
• Biological source: Psychromonas ingrahamii
• Total number of polymer chains: 2
• Total formula weight: 24944.37

Authors

Noguera, M.E.,Roman, E.A.,Cousido-Siah, A.,Mitschler, A.,Podjarny, A.,Santos, J. (deposition date: 2013-07-07, release date: 2014-07-16, Last modification date: 2023-11-08)

Primary citation

Noguera, M.E.,Roman, E.A.,Rigal, J.B.,Cousido-Siah, A.,Mitschler, A.,Podjarny, A.,Santos, J.
Structural characterization of metal binding to a cold-adapted frataxin
J.Biol.Inorg.Chem., 20:653-664, 2015

PubMed Abstract: Frataxin is an evolutionary conserved protein that participates in iron metabolism. Deficiency of this small protein in humans causes a severe neurodegenerative disease known as Friedreich's ataxia. A number of studies indicate that frataxin binds iron and regulates Fe-S cluster biosynthesis. Previous structural studies showed that metal binding occurs mainly in a region of high density of negative charge. However, a comprehensive characterization of the binding sites is required to gain further insights into the mechanistic details of frataxin function. In this work, we have solved the X-ray crystal structures of a cold-adapted frataxin from a psychrophilic bacterium in the presence of cobalt or europium ions. We have identified a number of metal-binding sites, mainly solvent exposed, several of which had not been observed in previous studies on mesophilic homologues. No major structural changes were detected upon metal binding, although the structures exhibit significant changes in crystallographic B-factors. The analysis of these B-factors, in combination with crystal packing and RMSD among structures, suggests the existence of localized changes in the internal motions. Based on these results, we propose that bacterial frataxins possess binding sites of moderate affinity for a quick capture and transfer of iron to other proteins and for the regulation of Fe-S cluster biosynthesis, modulating interactions with partner proteins.

PubMed: 25832196
DOI: 10.1007/s00775-015-1251-9

Experimental method

X-RAY DIFFRACTION (1.494 Å)