4KPB

Crystal structure of cytochrome P450 BM-3 R47E mutant

4KPB の概要

• エントリーDOI: 10.2210/pdb4kpb/pdb
• 関連するPDBエントリー: 4KPA
• 分子名称: Cytochrome P450 BM-3, PROTOPORPHYRIN IX CONTAINING FE (3 entities in total)
• 機能のキーワード: heme-dependent stereospecific oxidation of substrates, oxidoreductase
• 由来する生物種: Bacillus megaterium
• 細胞内の位置: Cytoplasm (By similarity): P14779
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 114209.26

構造登録者

Sadre-Bazzaz, K.,Catalano, J.,McDermott, A.E.,Tong, L. (登録日: 2013-05-13, 公開日: 2013-07-24, 最終更新日: 2024-02-28)

主引用文献

Catalano, J.,Sadre-Bazzaz, K.,Amodeo, G.A.,Tong, L.,McDermott, A.
Structural Evidence: A Single Charged Residue Affects Substrate Binding in Cytochrome P450 BM-3.
Biochemistry, 52:6807-6815, 2013

PubMed Abstract: Cytochrome P450 BM-3 is a bacterial enzyme with sequence similarity to mammalian P450s that catalyzes the hydroxylation of fatty acids with high efficiency. Enzyme-substrate binding and dynamics has been an important topic of study for cytochromes P450 because most of the crystal structures of substrate-bound structures show the complex in an inactive state. We have determined a new crystal structure for cytochrome P450 BM-3 in complex with N-palmitoylglycine (NPG), which unexpectedly showed a direct bidentate ion pair between NPG and arginine 47 (R47). We further explored the role of R47, the only charged residue in the binding pocket in cytochrome P450 BM-3, through mutagenesis and crystallographic studies. The mutations of R47 to glutamine (R47Q), glutamic acid (R47E), and lysine (R47K) were designed to investigate the role of its charge in binding and catalysis. The oppositely charged R47E mutation had the greatest effect on activity and binding. The crystal structure of R47E BMP shows that the glutamic acid side chain is blocking the entrance to the binding pocket, accounting for NPG's low binding affinity and charge repulsion. For R47Q and R47K BM-3, the mutations caused only a slight change in kcat and a large change in Km and Kd, which suggests that R47 mostly is involved in binding and that our crystal structure, 4KPA , represents an initial binding step in the P450 cycle.

PubMed: 23829560
DOI: 10.1021/bi4000645

実験手法

X-RAY DIFFRACTION (2.1 Å)