4K1X

Ferredoxin-NADP(H) Reductase mutant with Ala 266 replaced by Tyr (A266Y) and residues 267-272 deleted.

Summary for 4K1X

• Entry DOI: 10.2210/pdb4k1x/pdb
• Related: 2BGJ 2VNI
• Descriptor: NADPH:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, ... (4 entities in total)
• Functional Keywords: reductase, nadp+ binding, oxidoreductase
• Biological source: Rhodobacter capsulatus
• Total number of polymer chains: 2
• Total formula weight: 58444.22

Authors

Bortolotti, A.,Sanchez-Azqueta, A.,Maya, C.M.,Velazquez-Campoy, A.,Hermoso, J.A.,Cortez, N. (deposition date: 2013-04-06, release date: 2013-11-13, Last modification date: 2024-03-20)

Primary citation

Bortolotti, A.,Sanchez-Azqueta, A.,Maya, C.M.,Velazquez-Campoy, A.,Hermoso, J.A.,Medina, M.,Cortez, N.
The C-terminal extension of bacterial flavodoxin-reductases: Involvement in the hydride transfer mechanism from the coenzyme.
Biochim.Biophys.Acta, 1837:33-43, 2013

PubMed Abstract: To study the role of the mobile C-terminal extension present in bacterial class of plant type NADP(H):ferredoxin reductases during catalysis, we generated a series of mutants of the Rhodobacter capsulatus enzyme (RcFPR). Deletion of the six C-terminal amino acids beyond alanine 266 was combined with the replacement A266Y, emulating the structure present in plastidic versions of this flavoenzyme. Analysis of absorbance and fluorescence spectra suggests that deletion does not modify the general geometry of FAD itself, but increases exposure of the flavin to the solvent, prevents a productive geometry of FAD:NADP(H) complex and decreases the protein thermal stability. Although the replacement A266Y partially coats the isoalloxazine from solvent and slightly restores protein stability, this single change does not allow formation of active charge-transfer complexes commonly present in the wild-type FPR, probably due to restraints of C-terminus pliability. A proton exchange process is deduced from ITC measurements during coenzyme binding. All studied RcFPR variants display higher affinity for NADP(+) than wild-type, evidencing the contribution of the C-terminus in tempering a non-productive strong (rigid) interaction with the coenzyme. The decreased catalytic rate parameters confirm that the hydride transfer from NADPH to the flavin ring is considerably hampered in the mutants. Although the involvement of the C-terminal extension from bacterial FPRs in stabilizing overall folding and bent-FAD geometry has been stated, the most relevant contributions to catalysis are modulation of coenzyme entrance and affinity, promotion of the optimal geometry of an active complex and supply of a proton acceptor acting during coenzyme binding.

PubMed: 24016470
DOI: 10.1016/j.bbabio.2013.08.008

Experimental method

X-RAY DIFFRACTION (1.7 Å)