4J2G

Atg13 HORMA domain

Summary for 4J2G

• Entry DOI: 10.2210/pdb4j2g/pdb
• Descriptor: KLTH0A00704p, SULFATE ION (3 entities in total)
• Functional Keywords: autophagy, horma, atg13, unknown function
• Biological source: Lachancea thermotolerans (Yeast)
• Total number of polymer chains: 2
• Total formula weight: 61206.20

Authors

Jao, C.,Stanley, R.E.,Ragusa, M.J.,Hurley, J.H. (deposition date: 2013-02-04, release date: 2013-03-20, Last modification date: 2013-04-17)

Primary citation

Jao, C.C.,Ragusa, M.J.,Stanley, R.E.,Hurley, J.H.
A HORMA domain in Atg13 mediates PI 3-kinase recruitment in autophagy.
Proc.Natl.Acad.Sci.USA, 110:5486-5491, 2013

PubMed Abstract: Autophagy-related 13 (Atg13) is a key early-acting factor in autophagy and the major locus for nutrient-dependent regulation of autophagy by Tor. The 2.3-Å resolution crystal structure of the N-terminal domain of Atg13 reveals a previously unidentified HORMA (Hop1p, Rev1p and Mad2) domain similar to that of the spindle checkpoint protein Mad2. Mad2 has two different stable conformations, O-Mad2 and C-Mad2, and the Atg13 HORMA structure corresponds to the C-Mad2 state. The Atg13 HORMA domain is required for autophagy and for recruitment of the phosphatidylinositol (PI) 3-kinase subunit Atg14 but is not required for Atg1 interaction or Atg13 recruitment to the preautophagosomal structure. The Atg13 HORMA structure reveals a pair of conserved Arg residues that constitute a putative phosphate sensor. One of the Arg residues is in the region corresponding to the "safety belt" conformational switch of Mad2, suggesting conformational regulation of phosphate binding. These two Arg residues are essential for autophagy, suggesting that the Atg13 HORMA domain could function as a phosphoregulated conformational switch.

PubMed: 23509291
DOI: 10.1073/pnas.1220306110

Experimental method

X-RAY DIFFRACTION (2.29 Å)