4IJC

Crystal structure of arabinose dehydrogenase Ara1 from Saccharomyces cerevisiae

4IJC の概要

• エントリーDOI: 10.2210/pdb4ijc/pdb
• 関連するPDBエントリー: 4IJR
• 分子名称: D-arabinose dehydrogenase [NAD(P)+] heavy chain, SULFATE ION, GLYCEROL, ... (4 entities in total)
• 機能のキーワード: beta barrel, tim barrel, oxidoreductase
• 由来する生物種: Saccharomyces cerevisiae (yeast)
• 細胞内の位置: Cytoplasm: P38115
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 78341.24

構造登録者

Hu, X.Q.,Guo, P.C.,Li, W.F.,Zhou, C.Z. (登録日: 2012-12-21, 公開日: 2013-11-27, 最終更新日: 2023-11-08)

主引用文献

Hu, X.Q.,Guo, P.C.,Ma, J.D.,Li, W.F.
Structures of Saccharomyces cerevisiaeD-arabinose dehydrogenase Ara1 and its complex with NADPH: implications for cofactor-assisted substrate recognition
Acta Crystallogr.,Sect.F, 69:1190-1195, 2013

PubMed Abstract: The primary role of yeast Ara1, previously mis-annotated as a D-arabinose dehydrogenase, is to catalyze the reduction of a variety of toxic α,β-dicarbonyl compounds using NADPH as a cofactor at physiological pH levels. Here, crystal structures of Ara1 in apo and NADPH-complexed forms are presented at 2.10 and 2.00 Å resolution, respectively. Ara1 exists as a homodimer, each subunit of which adopts an (α/β)8-barrel structure and has a highly conserved cofactor-binding pocket. Structural comparison revealed that induced fit upon NADPH binding yielded an intact active-site pocket that recognizes the substrate. Moreover, the crystal structures combined with computational simulation defined an open substrate-binding site to accommodate various substrates that possess a dicarbonyl group.

PubMed: 24192347
DOI: 10.1107/S1744309113026857

実験手法

X-RAY DIFFRACTION (2.1 Å)