4GSA

CRYSTAL STRUCTURE OF GLUTAMATE-1-SEMIALDEHYDE AMINOMUTASE (AMINOTRANSFERASE) REDUCED WITH CYANOBOROHYDRATE

4GSA の概要

• エントリーDOI: 10.2210/pdb4gsa/pdb
• 分子名称: GLUTAMATE SEMIALDEHYDE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE (3 entities in total)
• 機能のキーワード: chlorophyll biosynthesis, pyridoxal-5'-phosphate, pyridoxamine-5'-phosphate, asymmetric dimer, reduced form
• 由来する生物種: Synechococcus sp.
• 細胞内の位置: Cytoplasm (Potential): P24630
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 92613.33

構造登録者

Hennig, M.,Jansonius, J.N. (登録日: 1997-02-26, 公開日: 1998-03-04, 最終更新日: 2024-04-03)

主引用文献

Hennig, M.,Grimm, B.,Contestabile, R.,John, R.A.,Jansonius, J.N.
Crystal structure of glutamate-1-semialdehyde aminomutase: an alpha2-dimeric vitamin B6-dependent enzyme with asymmetry in structure and active site reactivity.
Proc.Natl.Acad.Sci.USA, 94:4866-4871, 1997

PubMed Abstract: The three-dimensional structure of glutamate-1-semialdehyde aminomutase (EC 5.4.3.8), an alpha2-dimeric enzyme from Synechococcus, has been determined by x-ray crystallography using heavy atom derivative phasing. The structure, refined at 2.4-A resolution to an R-factor of 18.7% and good stereochemistry, explains many of the enzyme's unusual specificity and functional properties. The overall fold is that of aspartate aminotransferase and related B6 enzymes, but it also has specific features. The structure of the complex with gabaculine, a substrate analogue, shows unexpectedly that the substrate binding site involves residues from the N-terminal domain of the molecule, notably Arg-32. Glu-406 is suitably positioned to repel alpha-carboxylic acids, thereby suggesting a basis for the enzyme's reaction specificity. The subunits show asymmetry in cofactor binding and in the mobilities of the residues 153-181. In the unliganded enzyme, one subunit has the cofactor bound as an aldimine of pyridoxal phosphate with Lys-273 and, in this subunit, residues 153-181 are disordered. In the other subunit in which the cofactor is not covalently bound, residues 153-181 are well defined. Consistent with the crystallographically demonstrated asymmetry, a form of the enzyme in which both subunits have pyridoxal phosphate bound to Lys-273 through a Schiff base showed biphasic reduction by borohydride in solution. Analysis of absorption spectra during reduction provided evidence of communication between the subunits. The crystal structure of the reduced form of the enzyme shows that, despite identical cofactor binding in each monomer, the structural asymmetry at residues 153-181 remains.

PubMed: 9144156
DOI: 10.1073/pnas.94.10.4866

実験手法

X-RAY DIFFRACTION (2.5 Å)