4G0J

Crystallographic Analysis of Rotavirus NSP2-RNA Complex Reveals Specific Recognition of 5'-GG Sequence for RTPase activity

4G0J の概要

• エントリーDOI: 10.2210/pdb4g0j/pdb
• 分子名称: Non-structural protein 2 (1 entity in total)
• 機能のキーワード: rna triphosphatase, rna binding, hydrolase activity, nucleotide binding, metal ion binding, host cell cytoplasm, hydrolase
• 由来する生物種: Simian 11 rotavirus (RV-A)
• 細胞内の位置: Host cytoplasm (Potential): Q03243
• タンパク質・核酸の鎖数: 10
• 化学式量合計: 340703.91

構造登録者

Hu, L.,Prasad, B.V.V. (登録日: 2012-07-09, 公開日: 2012-08-22, 最終更新日: 2024-02-28)

主引用文献

Hu, L.,Chow, D.C.,Patton, J.T.,Palzkill, T.,Estes, M.K.,Prasad, B.V.
Crystallographic Analysis of Rotavirus NSP2-RNA Complex Reveals Specific Recognition of 5' GG Sequence for RTPase Activity.
J.Virol., 86:10547-10557, 2012

PubMed Abstract: Rotavirus nonstructural protein NSP2, a functional octamer, is critical for the formation of viroplasms, which are exclusive sites for replication and packaging of the segmented double-stranded RNA (dsRNA) rotavirus genome. As a component of replication intermediates, NSP2 is also implicated in various replication-related activities. In addition to sequence-independent single-stranded RNA-binding and helix-destabilizing activities, NSP2 exhibits monomer-associated nucleoside and 5' RNA triphosphatase (NTPase/RTPase) activities that are mediated by a conserved H225 residue within a narrow enzymatic cleft. Lack of a 5' γ-phosphate is a common feature of the negative-strand RNA [(-)RNA] of the packaged dsRNA segments in rotavirus. Strikingly, all (-)RNAs (of group A rotaviruses) have a 5' GG dinucleotide sequence. As the only rotavirus protein with 5' RTPase activity, NSP2 is implicated in the removal of the γ-phosphate from the rotavirus (-)RNA. To understand how NSP2, despite its sequence-independent RNA-binding property, recognizes (-)RNA to hydrolyze the γ-phosphate within the catalytic cleft, we determined a crystal structure of NSP2 in complex with the 5' consensus sequence of minus-strand rotavirus RNA. Our studies show that the 5' GG of the bound oligoribonucleotide interacts extensively with highly conserved residues in the NSP2 enzymatic cleft. Although these residues provide GG-specific interactions, surface plasmon resonance studies suggest that the C-terminal helix and other basic residues outside the enzymatic cleft account for sequence-independent RNA binding of NSP2. A novel observation from our studies, which may have implications in viroplasm formation, is that the C-terminal helix of NSP2 exhibits two distinct conformations and engages in domain-swapping interactions, which result in the formation of NSP2 octamer chains.

PubMed: 22811529
DOI: 10.1128/JVI.01201-12

実験手法

X-RAY DIFFRACTION (3.398 Å)