4C30

Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, form 2

4C30 の概要

• エントリーDOI: 10.2210/pdb4c30/pdb
• 関連するPDBエントリー: 4C2T 4C2U
• 分子名称: DNA HELICASE II, DNA STRAND FOR25, DNA STRAND REV25, ... (6 entities in total)
• 機能のキーワード: hydrolase-dna complex, dna repair, dna helicases, nucleotide excision repair, hydrolase/dna
• 由来する生物種: DEINOCOCCUS RADIODURANS; 詳細
• タンパク質・核酸の鎖数: 8
• 化学式量合計: 328147.82

構造登録者

Stelter, M.,Acajjaoui, S.,McSweeney, S.,Timmins, J. (登録日: 2013-08-21, 公開日: 2013-10-30, 最終更新日: 2024-05-01)

主引用文献

Stelter, M.,Acajjaoui, S.,Mcsweeney, S.,Timmins, J.
Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd.
Plos One, 8:77364-, 2013

PubMed Abstract: DNA helicases are responsible for unwinding the duplex DNA, a key step in many biological processes. UvrD is a DNA helicase involved in several DNA repair pathways. We report here crystal structures of Deinococcus radiodurans UvrD (drUvrD) in complex with DNA in different nucleotide-free and bound states. These structures provide us with three distinct snapshots of drUvrD in action and for the first time trap a DNA helicase undergoing a large-scale spiral movement around duplexed DNA. Our structural data also improve our understanding of the molecular mechanisms that regulate DNA unwinding by Superfamily 1A (SF1A) helicases. Our biochemical data reveal that drUvrD is a DNA-stimulated ATPase, can translocate along ssDNA in the 3'-5' direction and shows ATP-dependent 3'-5', and surprisingly also, 5'-3' helicase activity. Interestingly, we find that these translocase and helicase activities of drUvrD are modulated by the ssDNA binding protein. Analysis of drUvrD mutants indicate that the conserved β-hairpin structure of drUvrD that functions as a separation pin is critical for both drUvrD's 3'-5' and 5'-3' helicase activities, whereas the GIG motif of drUvrD involved in binding to the DNA duplex is essential for the 5'-3' helicase activity only. These special features of drUvrD may reflect its involvement in a wide range of DNA repair processes in vivo.

PubMed: 24143224
DOI: 10.1371/JOURNAL.PONE.0077364

実験手法

X-RAY DIFFRACTION (3 Å)