4BF5

Structure of broad spectrum racemase from Aeromonas hydrophila

4BF5 の概要

• エントリーDOI: 10.2210/pdb4bf5/pdb
• 関連するPDBエントリー: 4BEQ 4BEU
• 分子名称: ALANINE RACEMASE, PYRIDOXAL-5'-PHOSPHATE, CHLORIDE ION, ... (6 entities in total)
• 機能のキーワード: isomerase, d-amino acids
• 由来する生物種: AEROMONAS HYDROPHILA SUBSP. HYDROPHILA
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 93399.84

構造登録者

Carrasco-Lopez, C.,Hermoso, J.A. (登録日: 2013-03-15, 公開日: 2014-01-15, 最終更新日: 2023-12-20)

主引用文献

Espaillat, A.,Carrasco-Lopez, C.,Bernardo-Garcia, N.,Pietrosemoli, N.,Otero, L.H.,Alvarez, L.,De Pedro, M.A.,Pazos, F.,Davis, B.M.,Waldor, M.K.,Hermoso, J.A.,Cava, F.
Structural Basis for the Broad Specificity of a New Family of Amino-Acid Racemases.
Acta Crystallogr.,Sect.D, 70:79-, 2014

PubMed Abstract: Broad-spectrum amino-acid racemases (Bsrs) enable bacteria to generate noncanonical D-amino acids, the roles of which in microbial physiology, including the modulation of cell-wall structure and the dissolution of biofilms, are just beginning to be appreciated. Here, extensive crystallographic, mutational, biochemical and bioinformatic studies were used to define the molecular features of the racemase BsrV that enable this enzyme to accommodate more diverse substrates than the related PLP-dependent alanine racemases. Conserved residues were identified that distinguish BsrV and a newly defined family of broad-spectrum racemases from alanine racemases, and these residues were found to be key mediators of the multispecificity of BrsV. Finally, the structural analysis of an additional Bsr that was identified in the bioinformatic analysis confirmed that the distinguishing features of BrsV are conserved among Bsr family members.

PubMed: 24419381
DOI: 10.1107/S1399004713024838

実験手法

X-RAY DIFFRACTION (1.45 Å)