3VPT

Crystal structure of Bombyx mori sigma-class glutathione transferase in apo form

Summary for 3VPT

Related3VPQ 3VPU
DescriptorGlutathione S-transferase sigma, S-1,2-PROPANEDIOL, DI(HYDROXYETHYL)ETHER, ... (5 entities in total)
Functional Keywordstransferase, gsh binding, cytosol
Biological sourceBombyx mori (silk moth)
Total number of polymer chains1
Total molecular weight24444.91
Authors
Yamamoto, K.,Higashiura, A.,Suzuki, M.,Nakagawa, A. (deposition date: 2012-03-13, release date: 2013-03-06, Last modification date: 2013-07-31)
Primary citation
Yamamoto, K.,Higashiura, A.,Suzuki, M.,Aritake, K.,Urade, Y.,Uodome, N.,Nakagawa, A.
Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochim.Biophys.Acta, 1830:3711-3718, 2013
PubMed: 23458683 (PDB entries with the same primary citation)
DOI: 10.1016/j.bbagen.2013.02.021
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.9 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.25560.5%1.2%3.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3vpt
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Molmil generated image of 3vpt
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Molmil generated image of 3vpt
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More Biological unit images

Molmil generated image of 3vpt
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Molmil generated image of 3vpt
rotated about x axis by 90°
Molmil generated image of 3vpt
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3vpt.pdb1.gz [143.1 KB])