3TXD

HEWL co-crystallization with carboplatin in aqueous media with glycerol as the cryoprotectant

Summary for 3TXD

• Entry DOI: 10.2210/pdb3txd/pdb
• Related: 2I6Z 3TXB 3TXC 3TXE 3TXF 3TXG 3TXH 3TXI 3TXJ 3TXK 3TXL
• Descriptor: Lysozyme C, CHLORIDE ION, SODIUM ION, ... (5 entities in total)
• Functional Keywords: hen egg white lysozyme (hewl), bacterial cell wall lysis, hydrolase
• Biological source: Gallus gallus (chicken)
• Cellular location: Secreted: P00698
• Total number of polymer chains: 1
• Total formula weight: 15880.98

Authors

Tanley, S.W.M.,Schreurs, A.M.M.,Helliwell, J.R.,Kroon-Batenburg, L.M.J. (deposition date: 2011-09-23, release date: 2013-01-30, Last modification date: 2023-09-13)

Primary citation

Tanley, S.W.,Schreurs, A.M.,Helliwell, J.R.,Kroon-Batenburg, L.M.
Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals.
J.Appl.Crystallogr., 46:108-119, 2013

PubMed Abstract: The International Union of Crystallography has for many years been advocating archiving of raw data to accompany structural papers. Recently, it initiated the formation of the Diffraction Data Deposition Working Group with the aim of developing standards for the representation of these data. A means of studying this issue is to submit exemplar publications with associated raw data and metadata. A recent study on the effects of dimethyl sulfoxide on the binding of cisplatin and carboplatin to histidine in 11 different lysozyme crystals from two diffractometers led to an investigation of the possible effects of the equipment and X-ray diffraction data processing software on the calculated occupancies and B factors of the bound Pt compounds. 35.3 Gb of data were transferred from Manchester to Utrecht to be processed with EVAL. A systematic comparison shows that the largest differences in the occupancies and B factors of the bound Pt compounds are due to the software, but the equipment also has a noticeable effect. A detailed description of and discussion on the availability of metadata is given. By making these raw diffraction data sets available via a local depository, it is possible for the diffraction community to make their own evaluation as they may wish.

PubMed: 23396873
DOI: 10.1107/S0021889812044172

Experimental method

X-RAY DIFFRACTION (1.53 Å)