3NM8

Crystal structure of Tyrosinase from Bacillus megaterium

3NM8 の概要

• エントリーDOI: 10.2210/pdb3nm8/pdb
• 関連するPDBエントリー: 3NPY 3NQ0 3NQ1 3NQ5 3NTM
• 分子名称: Tyrosinase, COPPER (II) ION, ZINC ION, ... (5 entities in total)
• 機能のキーワード: tyrosinase, type3 copper proteins, oxidoreductase
• 由来する生物種: Bacillus megaterium
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 71493.76

構造登録者

Sendovski, M.,Kanteev, M.,Adir, N.,Fishman, A. (登録日: 2010-06-22, 公開日: 2010-11-17, 最終更新日: 2023-11-01)

主引用文献

Sendovski, M.,Kanteev, M.,Shuster Ben-Yosef, V.,Adir, N.,Fishman, A.
First structures of an active bacterial tyrosinase reveal copper plasticity
J.Mol.Biol., 405:227-237, 2011

PubMed Abstract: Tyrosinase is a member of the type 3 copper enzyme family that is involved in the production of melanin in a wide range of organisms. The crystal structures of a tyrosinase from Bacillus megaterium were determined at a resolution of 2.0-2.3 Å. The enzyme crystallized as a dimer in the asymmetric unit and was shown to be active in crystal. The overall monomeric structure is similar to that of the monomer of the previously determined tyrosinase from Streptomyces castaneoglobisporus, but it does not contain an accessory Cu-binding "caddie" protein. Two Cu(II) ions, serving as the major cofactors within the active site, are coordinated by six conserved histidine residues. However, determination of structures under different conditions shows varying occupancies and positions of the copper ions. This apparent mobility in copper binding modes indicates that there is a pathway by which copper is accumulated or lost by the enzyme. Additionally, we suggest that residues R209 and V218, situated in a second shell of residues surrounding the active site, play a role in substrate binding orientation based on their flexibility and position. The determination of a structure with the inhibitor kojic acid, the first tyrosinase structure with a bound ligand, revealed additional residues involved in the positioning of substrates in the active site. Comparison of wild-type structures with the structure of the site-specific variant R209H, which possesses a higher monophenolase/diphenolase activity ratio, lends further support to a previously suggested mechanism by which monophenolic substrates dock mainly to CuA.

PubMed: 21040728
DOI: 10.1016/j.jmb.2010.10.048

実験手法

X-RAY DIFFRACTION (2 Å)