3LTQ

Structure of Interleukin 1B solved by SAD using an inserted Lanthanide Binding Tag

3LTQ の概要

• エントリーDOI: 10.2210/pdb3ltq/pdb
• 分子名称: Interleukin-1 beta, TERBIUM(III) ION, ACETATE ION, ... (5 entities in total)
• 機能のキーワード: lanthanide binding tag, lbt, terbium, il1b, cytokine, inflammatory response, mitogen, pyrogen, secreted
• 由来する生物種: Homo sapiens (human)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 19856.10

構造登録者

Peisach, E.,Allen, K.N. (登録日: 2010-02-16, 公開日: 2011-02-16, 最終更新日: 2024-02-21)

主引用文献

Barthelmes, K.,Reynolds, A.M.,Peisach, E.,Jonker, H.R.,DeNunzio, N.J.,Allen, K.N.,Imperiali, B.,Schwalbe, H.
Engineering encodable lanthanide-binding tags into loop regions of proteins.
J.Am.Chem.Soc., 133:808-819, 2011

PubMed Abstract: Lanthanide-binding tags (LBTs) are valuable tools for investigation of protein structure, function, and dynamics by NMR spectroscopy, X-ray crystallography, and luminescence studies. We have inserted LBTs into three different loop positions (denoted L, R, and S) of the model protein interleukin-1β (IL1β) and varied the length of the spacer between the LBT and the protein (denoted 1−3). Luminescence studies demonstrate that all nine constructs bind Tb3+ tightly in the low nanomolar range. No significant change in the fusion protein occurs from insertion of the LBT, as shown by two X-ray crystallographic structures of the IL1β-S1 and IL1β-L3 constructs and for the remaining constructs by comparing the 1H−15N heteronuclear single-quantum coherence NMR spectra with that of the wild-type IL1β. Additionally, binding of LBT-loop IL1β proteins to their native binding partner in vitro remains unaltered. X-ray crystallographic phasing was successful using only the signal from the bound lanthanide. Large residual dipolar couplings (RDCs) could be determined by NMR spectroscopy for all LBT-loop constructs and revealed that the LBT-2 series were rigidly incorporated into the interleukin-1β structure. The paramagnetic NMR spectra of loop-LBT mutant IL1β-R2 were assigned and the Δχ tensor components were calculated on the basis of RDCs and pseudocontact shifts. A structural model of the IL1β-R2 construct was calculated using the paramagnetic restraints. The current data provide support that encodable LBTs serve as versatile biophysical tags when inserted into loop regions of proteins of known structure or predicted via homology modeling.

PubMed: 21182275
DOI: 10.1021/ja104983t

実験手法

X-RAY DIFFRACTION (2.1 Å)