3E1N

Crystal structure of E. coli Bacterioferritin (BFR) after a 65 minute (aerobic) exposure to FE(II) revealing a possible MU-OXO bridge/MU-Hydroxy bridged DIIRON intermediate at the ferroxidase centre. (FE(III)-O-FE(III)-BFR).

3E1N の概要

• エントリーDOI: 10.2210/pdb3e1n/pdb
• 関連するPDBエントリー: 3E1J 3E1L 3E1M 3E1O 3E1P 3E1Q
• 分子名称: BACTERIOFERRITIN, SULFATE ION, FE (II) ION, ... (6 entities in total)
• 機能のキーワード: bacterioferritin. rhombic dodecahedral superstructure., heme, iron, iron storage, metal-binding, metal binding protein
• 由来する生物種: ESCHERICHIA COLI
• タンパク質・核酸の鎖数: 12
• 化学式量合計: 230029.84

構造登録者

Crow, A.,Lawson, T.,Lewin, A.,Moore, G.R.,Le Brun, N. (登録日: 2008-08-04, 公開日: 2009-05-05, 最終更新日: 2025-02-12)

主引用文献

Crow, A.,Lawson, T.L.,Lewin, A.,Moore, G.R.,Le Brun, N.E.
Structural basis for iron mineralization by bacterioferritin
J.Am.Chem.Soc., 131:6808-6813, 2009

PubMed Abstract: Ferritin proteins function to detoxify, solubilize and store cellular iron by directing the synthesis of a ferric oxyhydroxide mineral solubilized within the protein's central cavity. Here, through the application of X-ray crystallographic and kinetic methods, we report significant new insight into the mechanism of mineralization in a bacterioferritin (BFR). The structures of nonheme iron-free and di-Fe(2+) forms of BFR showed that the intrasubunit catalytic center, known as the ferroxidase center, is preformed, ready to accept Fe(2+) ions with little or no reorganization. Oxidation of the di-Fe(2+) center resulted in a di-Fe(3+) center, with bridging electron density consistent with a mu-oxo or hydro bridged species. The mu-oxo bridged di-Fe(3+) center appears to be stable, and there is no evidence that Fe(3+)species are transferred into the core from the ferroxidase center. Most significantly, the data also revealed a novel Fe(2+) binding site on the inner surface of the protein, lying approximately 10 A directly below the ferroxidase center, coordinated by only two residues, His46 and Asp50. Kinetic studies of variants containing substitutions of these residues showed that the site is functionally important. In combination, the data support a model in which the ferroxidase center functions as a true catalytic cofactor, rather than as a pore for the transfer of iron into the central cavity, as found for eukaryotic ferritins. The inner surface iron site appears to be important for the transfer of electrons, derived from Fe(2+) oxidation in the cavity, to the ferroxidase center. Bacterioferritin may represent an evolutionary link between ferritins and class II di-iron proteins not involved in iron metabolism.

PubMed: 19391621
DOI: 10.1021/ja8093444

実験手法

X-RAY DIFFRACTION (2.8 Å)