3D8F

Crystal structure of the human Fe65-PTB1 domain with bound phosphate (trigonal crystal form)

Summary for 3D8F

• Entry DOI: 10.2210/pdb3d8f/pdb
• Related: 3D8D 3D8E
• Descriptor: Amyloid beta A4 precursor protein-binding family B member 1, PHOSPHATE ION (3 entities in total)
• Functional Keywords: alpha-beta structure, phosphotyrosine binding domain, protein binding
• Biological source: Homo sapiens (Human)
• Cellular location: Cell membrane: O00213
• Total number of polymer chains: 4
• Total formula weight: 67318.79

Authors

Radzimanowski, J.,Ravaud, S.,Sinning, I.,Wild, K. (deposition date: 2008-05-23, release date: 2008-06-10, Last modification date: 2024-03-20)

Primary citation

Radzimanowski, J.,Ravaud, S.,Schlesinger, S.,Koch, J.,Beyreuther, K.,Sinning, I.,Wild, K.
Crystal structure of the human Fe65-PTB1 domain.
J.Biol.Chem., 283:23113-23120, 2008

PubMed Abstract: The neuronal adaptor protein Fe65 is involved in brain development, Alzheimer disease amyloid precursor protein (APP) signaling, and proteolytic processing of APP. It contains three protein-protein interaction domains, one WW domain, and a unique tandem array of phosphotyrosine-binding (PTB) domains. The N-terminal PTB domain (Fe65-PTB1) was shown to interact with a variety of proteins, including the low density lipoprotein receptor-related protein (LRP-1), the ApoEr2 receptor, and the histone acetyltransferase Tip60. We have determined the crystal structures of human Fe65-PTB1 in its apo- and in a phosphate-bound form at 2.2 and 2.7A resolution, respectively. The overall fold shows a PTB-typical pleckstrin homology domain superfold. Although Fe65-PTB1 has been classified on an evolutionary basis as a Dab-like PTB domain, it contains attributes of other PTB domain subfamilies. The phosphotyrosine-binding pocket resembles IRS-like PTB domains, and the bound phosphate occupies the binding site of the phosphotyrosine (Tyr(P)) within the canonical NPXpY recognition motif. In addition Fe65-PTB1 contains a loop insertion between helix alpha2 and strand beta2(alpha2/beta2 loop) similar to members of the Shc-like PTB domain subfamily. The structural comparison with the Dab1-PTB domain reveals a putative phospholipid-binding site opposite the peptide binding pocket. We suggest Fe65-PTB1 to interact with its target proteins involved in translocation and signaling of APP in a phosphorylation-dependent manner.

PubMed: 18550529
DOI: 10.1074/jbc.M800861200

Experimental method

X-RAY DIFFRACTION (2.7 Å)