3CS5

NblA protein from Synechococcus elongatus PCC 7942

3CS5 の概要

• エントリーDOI: 10.2210/pdb3cs5/pdb
• 関連するPDBエントリー: 2Q8V 2QDO
• 分子名称: Phycobilisome degradation protein nblA (2 entities in total)
• 機能のキーワード: photosynthesis, phycobilisome, nutrient stress, bleaching, helix-turn-helix, partial merohedral twinning
• 由来する生物種: Synechococcus sp.
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 28240.30

構造登録者

Dines, M.,Sendersky, E.,Schwarz, R.,Adir, N. (登録日: 2008-04-09, 公開日: 2008-09-09, 最終更新日: 2023-11-01)

主引用文献

Dines, M.,Sendersky, E.,David, L.,Schwarz, R.,Adir, N.
Structural, Functional, and Mutational Analysis of the NblA Protein Provides Insight into Possible Modes of Interaction with the Phycobilisome
J.Biol.Chem., 283:30330-30340, 2008

PubMed Abstract: The enormous macromolecular phycobilisome antenna complex (>4 MDa) in cyanobacteria and red algae undergoes controlled degradation during certain forms of nutrient starvation. The NblA protein (approximately 6 kDa) has been identified as an essential component in this process. We have used structural, biochemical, and genetic methods to obtain molecular details on the mode of action of the NblA protein. We have determined the three-dimensional structure of the NblA protein from both the thermophilic cyanobacterium Thermosynechococcus vulcanus and the mesophilic cyanobacterium Synechococcus elongatus sp. PCC 7942. The NblA monomer has a helix-loop-helix motif which dimerizes into an open, four-helical bundle, identical to the previously determined NblA structure from Anabaena. Previous studies indicated that mutations to NblA residues near the C terminus impaired its binding to phycobilisome proteins in vitro, whereas the only mutation known to affect NblA function in vivo is located near the protein N terminus. We performed random mutagenesis of the S. elongatus nblA gene which enabled the identification of four additional amino acids crucial for NblA function in vivo. This data shows that essential amino acids are not confined to the protein termini. We also show that expression of the Anabaena nblA gene complements phycobilisome degradation in an S. elongatus NblA-null mutant despite the low homology between NblAs of these cyanobacteria. We propose that the NblA interacts with the phycobilisome via "structural mimicry" due to similarity in structural motifs found in all phycobiliproteins. This suggestion leads to a new model for the mode of NblA action which involves the entire NblA protein.

PubMed: 18718907
DOI: 10.1074/jbc.M804241200

実験手法

X-RAY DIFFRACTION (2.2 Å)