3A9Q
Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4
Summary for 3A9Q
| Entry DOI | 10.2210/pdb3a9q/pdb |
| Related | 3A68 |
| Descriptor | Ferritin-4, chloroplastic, CALCIUM ION, ACETIC ACID, ... (4 entities in total) |
| Functional Keywords | 4-helix bundle, chloroplast, iron, iron storage, metal-binding, oxidoreductase, plastid, transit peptide |
| Biological source | Glycine max (soybeans) |
| Cellular location | Plastid, chloroplast : Q948P5 |
| Total number of polymer chains | 24 |
| Total formula weight | 581065.43 |
| Authors | Masuda, T.,Goto, F.,Yoshihara, T.,Mikami, B. (deposition date: 2009-11-05, release date: 2009-12-08, Last modification date: 2023-11-01) |
| Primary citation | Masuda, T.,Goto, F.,Yoshihara, T.,Mikami, B. Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin J.Biol.Chem., 285:4049-4059, 2010 Cited by PubMed Abstract: Ferritins are important iron storage and detoxification proteins that are widely distributed in living kingdoms. Because plant ferritin possesses both a ferroxidase site and a ferrihydrite nucleation site, it is a suitable model for studying the mechanism of iron storage in ferritin. This article presents for the first time the crystal structure of a plant ferritin from soybean at 1.8-A resolution. The soybean ferritin 4 (SFER4) had a high structural similarity to vertebrate ferritin, except for the N-terminal extension region, the C-terminal short helix E, and the end of the BC-loop. Similar to the crystal structures of other ferritins, metal binding sites were observed in the iron entry channel, ferroxidase center, and nucleation site of SFER4. In addition to these conventional sites, a novel metal binding site was discovered intermediate between the iron entry channel and the ferroxidase site. This site was coordinated by the acidic side chain of Glu(173) and carbonyl oxygen of Thr(168), which correspond, respectively, to Glu(140) and Thr(135) of human H chain ferritin according to their sequences. A comparison of the ferroxidase activities of the native and the E173A mutant of SFER4 clearly showed a delay in the iron oxidation rate of the mutant. This indicated that the glutamate residue functions as a transit site of iron from the 3-fold entry channel to the ferroxidase site, which may be universal among ferritins. PubMed: 20007325DOI: 10.1074/jbc.M109.059790 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.896 Å) |
Structure validation
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