3REZ

glycoprotein GPIb variant

Summary for 3REZ

• Entry DOI: 10.2210/pdb3rez/pdb
• Related: 3RFE
• Descriptor: Platelet glycoprotein Ib beta chain, Platelet glycoprotein IX, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ... (6 entities in total)
• Functional Keywords: platelet surface receptor, glycoprotein, gp1bb and gpix, cell adhesion
• Biological source: Homo sapiens (human); More
• Cellular location: Membrane; Single-pass type I membrane protein: P13224
• Total number of polymer chains: 4
• Total formula weight: 58541.73

Authors

McEwan, P.A.,Yang, W.,Carr, K.H.,Mo, X.,Zheng, X.,Li, R.,Emsley, J. (deposition date: 2011-04-05, release date: 2012-02-15, Last modification date: 2024-10-16)

Primary citation

McEwan, P.A.,Yang, W.,Carr, K.H.,Mo, X.,Zheng, X.,Li, R.,Emsley, J.
Quaternary organization of GPIb-IX complex and insights into Bernard-Soulier syndrome revealed by the structures of GPIb beta and a GPIb beta/GPIX chimera
Blood, 118:5292-5301, 2011

PubMed Abstract: Platelet GPIb-IX receptor complex has 3 subunits GPIbα, GPIbβ, and GPIX, which assemble with a ratio of 1:2:1. Dysfunction in surface expression of the complex leads to Bernard-Soulier syndrome. We have crystallized the GPIbβ ectodomain (GPIbβ(E)) and determined the structure to show a single leucine-rich repeat with N- and C-terminal disulphide-bonded capping regions. The structure of a chimera of GPIbβ(E) and 3 loops (a,b,c) taken from the GPIX ectodomain sequence was also determined. The chimera (GPIbβ(Eabc)), but not GPIbβ(E), forms a tetramer in the crystal, showing a quaternary interface between GPIbβ and GPIX. Central to this interface is residue Tyr106 from GPIbβ, which inserts into a pocket generated by 2 loops (b,c) from GPIX. Mutagenesis studies confirmed this interface as a valid representation of interactions between GPIbβ and GPIX in the full-length complex. Eight GPIbβ missense mutations identified from patients with Bernard-Soulier syndrome were examined for changes to GPIb-IX complex surface expression. Two mutations, A108P and P74R, were found to maintain normal secretion/folding of GPIbβ(E) but were unable to support GPIX surface expression. The close structural proximity of these mutations to Tyr106 and the GPIbβ(E) interface with GPIX indicates they disrupt the quaternary organization of the GPIb-IX complex.

PubMed: 21908432
DOI: 10.1182/blood-2011-05-356253

Experimental method

X-RAY DIFFRACTION (2.35 Å)