3RDN
NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, MINIMIZED AVERAGE STRUCTURE
Summary for 3RDN
| Entry DOI | 10.2210/pdb3rdn/pdb |
| Descriptor | ANTIFREEZE PROTEIN RD3 TYPE III (1 entity in total) |
| Functional Keywords | antifreeze protein, thermal hysteresis protein, ice binding protein, antifreeze |
| Biological source | Lycodichthys dearborni (Antarctic eel pout) |
| Cellular location | Secreted: P35753 |
| Total number of polymer chains | 1 |
| Total formula weight | 7885.33 |
| Authors | Miura, K.,Ohgiya, S.,Hoshino, T.,Nemoto, N.,Hikichi, K.,Tsuda, S. (deposition date: 1998-02-24, release date: 1999-02-23, Last modification date: 2024-05-22) |
| Primary citation | Jia, Z.,DeLuca, C.I.,Chao, H.,Davies, P.L. Structural basis for the binding of a globular antifreeze protein to ice. Nature, 384:285-288, 1996 Cited by PubMed Abstract: Antifreeze proteins (AFPs) have the unique ability to adsorb to ice and inhibit its growth. Many organisms ranging from fish to bacteria use AFPs to retard freezing or lessen the damage incurred upon freezing and thawing. The ice-binding mechanism of the long linear alpha-helical type I AFPs has been attributed to their regularly spaced polar residues matching the ice lattice along a pyramidal plane. In contrast, it is not known how globular antifreeze proteins such as type III AFP that lack repeating ice-binding residues bind to ice. Here we report the 1.25 A crystal structure of recombinant type III AFP (QAE isoform) from eel pout (Macrozoarces americanus), which reveals a remarkably flat amphipathic ice-binding site where five hydrogen-bonding atoms match two ranks of oxygens on the [1010] ice prism plane in the <0001> direction, giving high ice-binding affinity and specificity. This binding site, substantiated by the structures and properties of several ice-binding site mutants, suggests that the AFP occupies a niche in the ice surface in which it covers the basal plane while binding to the prism face. PubMed: 8918883DOI: 10.1038/384285a0 PDB entries with the same primary citation |
| Experimental method | SOLUTION NMR |
Structure validation
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