2ZYB

Crystal structure of phenylimidazo pyrazin 2 bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)

2ZYB の概要

• エントリーDOI: 10.2210/pdb2zyb/pdb
• 関連するPDBエントリー: 2ZOB 3LCK
• 分子名称: Proto-oncogene tyrosine-protein kinase LCK, SULFATE ION, N-(2,6-dimethylphenyl)-5-phenylimidazo[1,5-a]pyrazin-8-amine, ... (4 entities in total)
• 機能のキーワード: tyrosine-protein kinase, atp-binding, phosphorylation, signal transduction, alternative splicing, chromosomal rearrangement, cytoplasm, disease mutation, host-virus interaction, kinase, lipoprotein, membrane, myristate, nucleotide-binding, palmitate, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, cell membrane, polymorphism
• 由来する生物種: Homo sapiens (Human)
• 細胞内の位置: Cytoplasm: P06239
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 33476.05

構造登録者

Tsuji, E. (登録日: 2009-01-19, 公開日: 2009-02-03, 最終更新日: 2024-11-20)

主引用文献

Ozawa, T.,Tsuji, E.,Ozawa, M.,Handa, C.,Mukaiyama, H.,Nishimura, T.,Kobayashi, S.,Okazaki, K.
The importance of CH/pi hydrogen bonds in rational drug design: An ab initio fragment molecular orbital study to leukocyte-specific protein tyrosine (LCK) kinase
Bioorg.Med.Chem., 16:10311-10318, 2008

PubMed Abstract: The interaction energy was calculated, by the ab initio FMO method, for complexes between LCK protein and four inhibitors (staurosporine, BMS compound 2, and our compounds 3 and 4). In every case a number of CH/pi hydrogen bonds have been disclosed in the so-called adenine pocket. In complexes of 2, 3, and 4, CH/pi and NH/pi hydrogen bonds have been observed in another pocket. In view of the above results, the aniline ring of 3 was replaced by 2,6-dimethyl aniline to increase the potency for LCK kinase. A 10-fold increase in the potency has been achieved for 4 over 3. We suggest that the concept of weak hydrogen bonds is useful in the rational design of drugs.

PubMed: 18977146
DOI: 10.1016/j.bmc.2008.10.041

実験手法

X-RAY DIFFRACTION (2.55 Å)