2YDD

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, soaked with 2',3'-cyclic AMP

2YDD の概要

• エントリーDOI: 10.2210/pdb2ydd/pdb
• 関連するPDBエントリー: 2XMI 2Y1P 2Y3X 2YDB 2YDC
• 分子名称: 2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE, ADENOSINE-2'-MONOPHOSPHATE (3 entities in total)
• 機能のキーワード: hydrolase, myelin, nervous system
• 由来する生物種: MUS MUSCULUS (HOUSE MOUSE)
• 細胞内の位置: Membrane ; Lipid-anchor : P16330
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 24641.15

構造登録者

Myllykoski, M.,Kursula, P. (登録日: 2011-03-18, 公開日: 2012-03-21, 最終更新日: 2023-12-20)

主引用文献

Myllykoski, M.,Raasakka, A.,Han, H.,Kursula, P.
Myelin 2',3'-Cyclic Nucleotide 3'-Phosphodiesterase: Active- Site Ligand Binding and Molecular Conformation.
Plos One, 7:32336-, 2012

PubMed Abstract: The 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNPase) is a highly abundant membrane-associated enzyme in the myelin sheath of the vertebrate nervous system. CNPase is a member of the 2H phosphoesterase family and catalyzes the formation of 2'-nucleotide products from 2',3'-cyclic substrates; however, its physiological substrate and function remain unknown. It is likely that CNPase participates in RNA metabolism in the myelinating cell. We solved crystal structures of the phosphodiesterase domain of mouse CNPase, showing the binding mode of nucleotide ligands in the active site. The binding mode of the product 2'-AMP provides a detailed view of the reaction mechanism. Comparisons of CNPase crystal structures highlight flexible loops, which could play roles in substrate recognition; large differences in the active-site vicinity are observed when comparing more distant members of the 2H family. We also studied the full-length CNPase, showing its N-terminal domain is involved in RNA binding and dimerization. Our results provide a detailed picture of the CNPase active site during its catalytic cycle, and suggest a specific function for the previously uncharacterized N-terminal domain.

PubMed: 22393399
DOI: 10.1371/JOURNAL.PONE.0032336

実験手法

X-RAY DIFFRACTION (2.4 Å)