2XWQ

Anaerobic cobalt chelatase from Archeaoglobus fulgidus (CbiX) in complex with metalated sirohydrochlorin product

Summary for 2XWQ

• Entry DOI: 10.2210/pdb2xwq/pdb
• Related: 1TJN 2DJ5 2XWP 2XWS
• Descriptor: SIROHYDROCHLORIN COBALTOCHELATASE, COBALT SIROHYDROCHLORIN (3 entities in total)
• Functional Keywords: lyase, beta-alpha-beta, cobalamin biosynthesis, metal-binding, parallel beta sheet
• Biological source: ARCHAEOGLOBUS FULGIDUS
• Total number of polymer chains: 4
• Total formula weight: 62601.50

Authors

Ladakis, D.,Brindley, A.A.,Deery, E.,Warren, M.J.,Pickersgill, R.W. (deposition date: 2010-11-04, release date: 2010-12-22, Last modification date: 2024-09-18)

Primary citation

Romao, C.V.,Ladakis, D.,Lobo, S.A.,Carrondo, M.A.,Brindley, A.A.,Deery, E.,Matias, P.M.,Pickersgill, R.W.,Saraiva, L.M.,Warren, M.J.
Evolution in a Family of Chelatases Facilitated by the Introduction of Active Site Asymmetry and Protein Oligomerization.
Proc.Natl.Acad.Sci.USA, 108:97-, 2011

PubMed Abstract: The class II chelatases associated with heme, siroheme, and cobalamin biosynthesis are structurally related enzymes that insert a specific metal ion (Fe(2+) or Co(2+)) into the center of a modified tetrapyrrole (protoporphyrin or sirohydrochlorin). The structures of two related class II enzymes, CbiX(S) from Archaeoglobus fulgidus and CbiK from Salmonella enterica, that are responsible for the insertion of cobalt along the cobalamin biosynthesis pathway are presented in complex with their metallated product. A further structure of a CbiK from Desulfovibrio vulgaris Hildenborough reveals how cobalt is bound at the active site. The crystal structures show that the binding of sirohydrochlorin is distinctly different to porphyrin binding in the protoporphyrin ferrochelatases and provide a molecular overview of the mechanism of chelation. The structures also give insights into the evolution of chelatase form and function. Finally, the structure of a periplasmic form of Desulfovibrio vulgaris Hildenborough CbiK reveals a novel tetrameric arrangement of its subunits that are stabilized by the presence of a heme b cofactor. Whereas retaining colbaltochelatase activity, this protein has acquired a central cavity with the potential to chaperone or transport metals across the periplasmic space, thereby evolving a new use for an ancient protein subunit.

PubMed: 21173279
DOI: 10.1073/PNAS.1014298108

Experimental method

X-RAY DIFFRACTION (2.01 Å)